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The map label for this gene is sigI [C]

Identifier: 169630082

GI number: 169630082

Start: 3060104

End: 3060982

Strand: Reverse

Name: sigI [C]

Synonym: MAB_2999c

Alternate gene names: 169630082

Gene position: 3060982-3060104 (Counterclockwise)

Preceding gene: 169630085

Following gene: 169630080

Centisome position: 60.41

GC content: 68.03

Gene sequence:

>879_bases
ATGAGCTCCTCGTCCACCCACGACGCGCTGGTGACCGCGGCTTGGCGCGAGCATTACCCGTACCTGGTGAACCTGGCCTA
TCAGATGCTCGGCGATATCGGCGACGCCGAGGACGCGGTCCAGGAGGCATTTGTGCGGCTGGCCCGGGCTGAGGAGACGG
AGATTGACGAGCCACGTGCCTGGTTGTCGGTGGTGGTGGGCCGGTTGTGCCTGGATCAGCTGCGTTCGGCGCGTATGCGC
CGTGAGCGGACAGGGGTCGCATCCGTGGTGGAATCCGCTGCCCCGCTGCATGTTCCGGCGGTTACCGATCCGGCGGATCG
GGTTACGTTGGATGATGAGGTACGCGGTGCCCTGTTGGAGGTGTTGCGCTCGCTGAGCCCCGGTGAGCGGGTGGCGTTCG
TCCTACATGACGTGTTCGCAGTGCCGTTCGAGGAGATCGCGTCGACGGTGGGCCGCCCGGTGGGAACCTGCCGCCAGCTC
GCCCGCCGAGCCCGGACCCGATTCCAGCAGTCCGCGGCACGCTCCACCGATGTCACCGGCGCCGAGCATCAGCAGCTGAT
CGAAAAATTCGTCACCGCATGTGCCCAAGGCGATCTGACCGGGTTGATGGCGGTACTAGATCCCGGGGTCTGGGGGGTGG
GCACCATCCTCGGAGATCCCGCCCCGCCGCCGCAGGTGAATCGCGGGCGCACCGATGTCGCCACCAACCTGCTCGTCTAC
CTGGGTCCCGGCGCCACCCTGGTGGGCGGCCCCTTCGGGCAGCCGGTGCTGCTGGCCTTCACCCAGCGCAGGCTCTTCGC
GGTGGTTACCCTCACGGTGCGCGAAGGCCTGGTGCTCAAGATCGAAGCCACCGCCGATCCGGCGGCCCGCGGACGGTGA

Upstream 100 bases:

>100_bases
CCAGCTGGGTCTTTGGCCCACGCGAATACGACGGGGCGCGGGCCCGAAAAGTTACTGGCGGGACCGGTAACTTTCGGGGT
CACGGAATCGTCGTAATGAC

Downstream 100 bases:

>100_bases
CTCAGATATCGGCCAGTGCTGCGATACACGCCCGTCCCAGACAGGCCGGGTCTGCGCCGAGCTGATCCAGCGTGAAGGTA
CGCAGCGCCGCCCGTGGGGC

Product: RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; Sigma-; ECF-Sigma Factor; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigI; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase ECF-Type Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; Sigma Factor Sigma; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; ECF Sigma Factor; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase ECF-Type Sigma Factor SigJ; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; RNA Polymerase; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSSSSTHDALVTAAWREHYPYLVNLAYQMLGDIGDAEDAVQEAFVRLARAEETEIDEPRAWLSVVVGRLCLDQLRSARMR
RERTGVASVVESAAPLHVPAVTDPADRVTLDDEVRGALLEVLRSLSPGERVAFVLHDVFAVPFEEIASTVGRPVGTCRQL
ARRARTRFQQSAARSTDVTGAEHQQLIEKFVTACAQGDLTGLMAVLDPGVWGVGTILGDPAPPPQVNRGRTDVATNLLVY
LGPGATLVGGPFGQPVLLAFTQRRLFAVVTLTVREGLVLKIEATADPAARGR

Sequences:

>Translated_292_residues
MSSSSTHDALVTAAWREHYPYLVNLAYQMLGDIGDAEDAVQEAFVRLARAEETEIDEPRAWLSVVVGRLCLDQLRSARMR
RERTGVASVVESAAPLHVPAVTDPADRVTLDDEVRGALLEVLRSLSPGERVAFVLHDVFAVPFEEIASTVGRPVGTCRQL
ARRARTRFQQSAARSTDVTGAEHQQLIEKFVTACAQGDLTGLMAVLDPGVWGVGTILGDPAPPPQVNRGRTDVATNLLVY
LGPGATLVGGPFGQPVLLAFTQRRLFAVVTLTVREGLVLKIEATADPAARGR
>Mature_291_residues
SSSSTHDALVTAAWREHYPYLVNLAYQMLGDIGDAEDAVQEAFVRLARAEETEIDEPRAWLSVVVGRLCLDQLRSARMRR
ERTGVASVVESAAPLHVPAVTDPADRVTLDDEVRGALLEVLRSLSPGERVAFVLHDVFAVPFEEIASTVGRPVGTCRQLA
RRARTRFQQSAARSTDVTGAEHQQLIEKFVTACAQGDLTGLMAVLDPGVWGVGTILGDPAPPPQVNRGRTDVATNLLVYL
GPGATLVGGPFGQPVLLAFTQRRLFAVVTLTVREGLVLKIEATADPAARGR

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31482; Mature: 31351

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSSTHDALVTAAWREHYPYLVNLAYQMLGDIGDAEDAVQEAFVRLARAEETEIDEPRA
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHH
WLSVVVGRLCLDQLRSARMRRERTGVASVVESAAPLHVPAVTDPADRVTLDDEVRGALLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
VLRSLSPGERVAFVLHDVFAVPFEEIASTVGRPVGTCRQLARRARTRFQQSAARSTDVTG
HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
AEHQQLIEKFVTACAQGDLTGLMAVLDPGVWGVGTILGDPAPPPQVNRGRTDVATNLLVY
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHCEEEE
LGPGATLVGGPFGQPVLLAFTQRRLFAVVTLTVREGLVLKIEATADPAARGR
ECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SSSSTHDALVTAAWREHYPYLVNLAYQMLGDIGDAEDAVQEAFVRLARAEETEIDEPRA
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHH
WLSVVVGRLCLDQLRSARMRRERTGVASVVESAAPLHVPAVTDPADRVTLDDEVRGALLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
VLRSLSPGERVAFVLHDVFAVPFEEIASTVGRPVGTCRQLARRARTRFQQSAARSTDVTG
HHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
AEHQQLIEKFVTACAQGDLTGLMAVLDPGVWGVGTILGDPAPPPQVNRGRTDVATNLLVY
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCHHHHHCEEEE
LGPGATLVGGPFGQPVLLAFTQRRLFAVVTLTVREGLVLKIEATADPAARGR
ECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA