Click here to switch to the map view.

The map label for this gene is xynD [H]

Identifier: 169629676

GI number: 169629676

Start: 2634229

End: 2634993

Strand: Direct

Name: xynD [H]

Synonym: MAB_2590

Alternate gene names: 169629676

Gene position: 2634229-2634993 (Clockwise)

Preceding gene: 169629674

Following gene: 169629679

Centisome position: 51.99

GC content: 61.96

Gene sequence:

>765_bases
GTGTTCGACCGACGTCGGTTCTTGACGCTGCTGGCAGGCGCCGCCGCGGCGGGGGCTTCGTTCATCGAGTATGTCTCGGC
GGCCGCTGATCCCGGTACCGCCGCGGGATCGTCGAACAGCGGTCTGCCACGGGTTCCCCTGCCGGGAGGCGGCACCTTGA
CCGCGTTGCCATCGCGCACCGACGGTCAGCGTCTCCTTGCCTTGACTCTCGATGACGGCACCGATGCGAACGTCATCGCG
GCCTACACACAACTGGCCCGCGATACCGGAATGCGCCTGACCTACTTTGTCAATGGCGTGAACGCGGGATGGACACAGAA
CGCTCCAATGCTGCGCCCGCTCGTCGACAGTGGGCAGATCCAGCTCGGCAATCACACCTGGTCTCATCCCAATCTGACGA
CGCTTACCGCTGAGCAGATCGCCGATCAAATGGCCCGAAACACCAAATTCTTGGTCAATACCTACGGGGTCGATCCGGCG
CCGTACTTCCGGCCGCCGTACGGAAAGCACAATGCGGCAACGGATTCGGTTACCCGGGGACTGGGCTACGGCCCACCGGT
CCTTTGGTATGGATCACTATCGGACTCCGGCGTAGTTACCCCGGAGTACATCGTGGACATGGCCCGCAAGTACTTCAACC
CACAGGCAATTGTCATCGGGCACCTCAACCACCCGCCCGTGACGACGGTCTATCGCCAACTGCTCGACGTCATCGGCGAA
AGACAATTGCGCACGGTCACGCTCAACGACGTGTATCAGCACTAG

Upstream 100 bases:

>100_bases
GCCGCACGAGCGCAGAGCAAAGTTGATCACGGAAGAAACGGTAGCCCGGCAACGGGAGCGGCGCCGCGCGATATCCAGGT
TCCGGGTCTACCCTGTCACC

Downstream 100 bases:

>100_bases
ATCGGATGTGGTCCCGGCTCCAGCAGTCGCTTGGGGTGCATACCGTCGACCTGCCCGATAAAGGGCGGATGGATGCTGTA
TCCGAGCATGCGCCGAATAT

Product: putative polysaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase D; XYLD; Xylanase D; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFDRRRFLTLLAGAAAAGASFIEYVSAAADPGTAAGSSNSGLPRVPLPGGGTLTALPSRTDGQRLLALTLDDGTDANVIA
AYTQLARDTGMRLTYFVNGVNAGWTQNAPMLRPLVDSGQIQLGNHTWSHPNLTTLTAEQIADQMARNTKFLVNTYGVDPA
PYFRPPYGKHNAATDSVTRGLGYGPPVLWYGSLSDSGVVTPEYIVDMARKYFNPQAIVIGHLNHPPVTTVYRQLLDVIGE
RQLRTVTLNDVYQH

Sequences:

>Translated_254_residues
MFDRRRFLTLLAGAAAAGASFIEYVSAAADPGTAAGSSNSGLPRVPLPGGGTLTALPSRTDGQRLLALTLDDGTDANVIA
AYTQLARDTGMRLTYFVNGVNAGWTQNAPMLRPLVDSGQIQLGNHTWSHPNLTTLTAEQIADQMARNTKFLVNTYGVDPA
PYFRPPYGKHNAATDSVTRGLGYGPPVLWYGSLSDSGVVTPEYIVDMARKYFNPQAIVIGHLNHPPVTTVYRQLLDVIGE
RQLRTVTLNDVYQH
>Mature_254_residues
MFDRRRFLTLLAGAAAAGASFIEYVSAAADPGTAAGSSNSGLPRVPLPGGGTLTALPSRTDGQRLLALTLDDGTDANVIA
AYTQLARDTGMRLTYFVNGVNAGWTQNAPMLRPLVDSGQIQLGNHTWSHPNLTTLTAEQIADQMARNTKFLVNTYGVDPA
PYFRPPYGKHNAATDSVTRGLGYGPPVLWYGSLSDSGVVTPEYIVDMARKYFNPQAIVIGHLNHPPVTTVYRQLLDVIGE
RQLRTVTLNDVYQH

Specific function: Endo-acting xylanase which displays no detectable activity against polysaccharides other than xylan. Hydrolyzes glucosidic bonds with retention of anomeric configuration [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR012291
- InterPro:   IPR001919
- InterPro:   IPR008985
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00553 CBM_2; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 27415; Mature: 27415

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDRRRFLTLLAGAAAAGASFIEYVSAAADPGTAAGSSNSGLPRVPLPGGGTLTALPSRT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
DGQRLLALTLDDGTDANVIAAYTQLARDTGMRLTYFVNGVNAGWTQNAPMLRPLVDSGQI
CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCE
QLGNHTWSHPNLTTLTAEQIADQMARNTKFLVNTYGVDPAPYFRPPYGKHNAATDSVTRG
EECCEECCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHC
LGYGPPVLWYGSLSDSGVVTPEYIVDMARKYFNPQAIVIGHLNHPPVTTVYRQLLDVIGE
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
RQLRTVTLNDVYQH
CCEEEEEHHHHHCC
>Mature Secondary Structure
MFDRRRFLTLLAGAAAAGASFIEYVSAAADPGTAAGSSNSGLPRVPLPGGGTLTALPSRT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
DGQRLLALTLDDGTDANVIAAYTQLARDTGMRLTYFVNGVNAGWTQNAPMLRPLVDSGQI
CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCE
QLGNHTWSHPNLTTLTAEQIADQMARNTKFLVNTYGVDPAPYFRPPYGKHNAATDSVTRG
EECCEECCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHC
LGYGPPVLWYGSLSDSGVVTPEYIVDMARKYFNPQAIVIGHLNHPPVTTVYRQLLDVIGE
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
RQLRTVTLNDVYQH
CCEEEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8170399 [H]