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The map label for this gene is ycdM [C]

Identifier: 169629535

GI number: 169629535

Start: 2505180

End: 2506052

Strand: Direct

Name: ycdM [C]

Synonym: MAB_2449

Alternate gene names: 169629535

Gene position: 2505180-2506052 (Clockwise)

Preceding gene: 169629534

Following gene: 169629536

Centisome position: 49.44

GC content: 62.54

Gene sequence:

>873_bases
ATGCGGTTCACCTTCGCCGAGGCGATGACCGACCCCTCGTACTACATCCCGTTGGCCCAGGCTGCCGAGGCCGCTGGATA
TGACGGCATGACCATCGCCGACAGCCTGGCGTATCCCTATGAGTCGGACGCGAAATATCCGTATACGCCCGACGGGAACC
GTGAATTCCTCGAGGGCAAACCGTTTATCGAAGCGCTGACCCTTACCGCGGCCCTTGGTGCCGTGACCTCGACACTGCGG
TTCAACATCTTCGTTCTCAAGCTACCGATCCGCCCTCCTGCGCTGGTGGCCAAGCAGGCCTCTTCCATCGCGGCGTTGAC
GGGCAACCGCCTTGGCCTGGGCGTGGGCACCAGCCCCTGGCCCGAGGACTATGAGCTGATGAATGTGCCATTCGCCAAGC
GCGGCAAGCGCATGGACGAGTGCATCGAGATCATCCAGGGACTTACCACCGGCGACTACTTCGAGTTCCACGGCGAGTTC
TACGACATTCCCAAGACCAAGATGTGCCCCGCGCCCACAGCACCCATCCCGATCCTCGTCGGTGGCCATGCCGATGCGGC
GCTGCGGCGCGCGGCCCGGTGCGACGGTTGGATGCACGGCGGCGGCACCGAGGACCTGGACGAGCTGTTGGCCACGTTGA
ACAAGTTCCGCGAAGAGGAAGGGACGGTCGAGAAGCCGTTCGAGGTGCACGTCATCTCCGTCGACGGGTTCACGGTGGAC
GGCGTAAAGCGCCTCGAAGATAAGGGTGTCACCGATGTCATCGTCGGCTTCCGCATTCCCTACATCGTCGGACCGGATAC
CGAGCCGCTGGACACCAAGATCCGCAACCTGGAGAGCTTCGCCGAACACGTCATTTCCAAGGTGAATCCCTGA

Upstream 100 bases:

>100_bases
ACACCGCAAAAACAATATGCGAGTTCAGATTTCGCAACCGCTAGAGTGCGTAGTACGGGCAGCATCGGTGCTCCCCGATA
GGGCACTCTAGGAGGAATCT

Downstream 100 bases:

>100_bases
CCCTTCTCCTCTTTACATCTACTCGCGAGTGGCAGGGCCTACCCGCTCCGGTCATCTCCAGGTTTCTGTGGCAGGGTGTG
GGCCGCATTGCTGCCCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MRFTFAEAMTDPSYYIPLAQAAEAAGYDGMTIADSLAYPYESDAKYPYTPDGNREFLEGKPFIEALTLTAALGAVTSTLR
FNIFVLKLPIRPPALVAKQASSIAALTGNRLGLGVGTSPWPEDYELMNVPFAKRGKRMDECIEIIQGLTTGDYFEFHGEF
YDIPKTKMCPAPTAPIPILVGGHADAALRRAARCDGWMHGGGTEDLDELLATLNKFREEEGTVEKPFEVHVISVDGFTVD
GVKRLEDKGVTDVIVGFRIPYIVGPDTEPLDTKIRNLESFAEHVISKVNP

Sequences:

>Translated_290_residues
MRFTFAEAMTDPSYYIPLAQAAEAAGYDGMTIADSLAYPYESDAKYPYTPDGNREFLEGKPFIEALTLTAALGAVTSTLR
FNIFVLKLPIRPPALVAKQASSIAALTGNRLGLGVGTSPWPEDYELMNVPFAKRGKRMDECIEIIQGLTTGDYFEFHGEF
YDIPKTKMCPAPTAPIPILVGGHADAALRRAARCDGWMHGGGTEDLDELLATLNKFREEEGTVEKPFEVHVISVDGFTVD
GVKRLEDKGVTDVIVGFRIPYIVGPDTEPLDTKIRNLESFAEHVISKVNP
>Mature_290_residues
MRFTFAEAMTDPSYYIPLAQAAEAAGYDGMTIADSLAYPYESDAKYPYTPDGNREFLEGKPFIEALTLTAALGAVTSTLR
FNIFVLKLPIRPPALVAKQASSIAALTGNRLGLGVGTSPWPEDYELMNVPFAKRGKRMDECIEIIQGLTTGDYFEFHGEF
YDIPKTKMCPAPTAPIPILVGGHADAALRRAARCDGWMHGGGTEDLDELLATLNKFREEEGTVEKPFEVHVISVDGFTVD
GVKRLEDKGVTDVIVGFRIPYIVGPDTEPLDTKIRNLESFAEHVISKVNP

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787247, Length=147, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 31783; Mature: 31783

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFTFAEAMTDPSYYIPLAQAAEAAGYDGMTIADSLAYPYESDAKYPYTPDGNREFLEGK
CCEEHHHHHCCCCEEEEHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PFIEALTLTAALGAVTSTLRFNIFVLKLPIRPPALVAKQASSIAALTGNRLGLGVGTSPW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHEEECCCEEEECCCCCCC
PEDYELMNVPFAKRGKRMDECIEIIQGLTTGDYFEFHGEFYDIPKTKMCPAPTAPIPILV
CCCCEEECCCHHHHCCCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEEE
GGHADAALRRAARCDGWMHGGGTEDLDELLATLNKFREEEGTVEKPFEVHVISVDGFTVD
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEHH
GVKRLEDKGVTDVIVGFRIPYIVGPDTEPLDTKIRNLESFAEHVISKVNP
HHHHHHHCCCCEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFTFAEAMTDPSYYIPLAQAAEAAGYDGMTIADSLAYPYESDAKYPYTPDGNREFLEGK
CCEEHHHHHCCCCEEEEHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PFIEALTLTAALGAVTSTLRFNIFVLKLPIRPPALVAKQASSIAALTGNRLGLGVGTSPW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHEEECCCEEEECCCCCCC
PEDYELMNVPFAKRGKRMDECIEIIQGLTTGDYFEFHGEFYDIPKTKMCPAPTAPIPILV
CCCCEEECCCHHHHCCCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEEE
GGHADAALRRAARCDGWMHGGGTEDLDELLATLNKFREEEGTVEKPFEVHVISVDGFTVD
CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEHH
GVKRLEDKGVTDVIVGFRIPYIVGPDTEPLDTKIRNLESFAEHVISKVNP
HHHHHHHCCCCEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]