Click here to switch to the map view.

The map label for this gene is 169629492

Identifier: 169629492

GI number: 169629492

Start: 2460894

End: 2461517

Strand: Direct

Name: 169629492

Synonym: MAB_2406

Alternate gene names: NA

Gene position: 2460894-2461517 (Clockwise)

Preceding gene: 169629491

Following gene: 169629493

Centisome position: 48.57

GC content: 66.67

Gene sequence:

>624_bases
GTGGTCGAACAGCCGCAGCAGGGGCAGCTGGAGATGACGTTGGACAACGGGGCAGCGGGCTCTGTTGATTCCGCGACTAC
CGGACCTGTCCAGCCGGGTCTCTTCCCGGATGACTCAGTTCCTGATCAGCTCGTCGGCTACCGCGGCCCGAGCGCCTGCC
AGGTTGCCGGCATCACCTACCGCCAGCTGGACTACTGGGCTCGCACCTCGCTCGTCGTTCCCTCGATCCGTAGCGCGGCC
GGCTCGGGTAGCCAACGGCTTTACTCGTTCAAGGACATCCTGGTCCTCAAGATCGTGAAGCGGCTGTTGGACACCGGCAT
CTCGCTACAGAACATCCGCGTCGCCGTTGAGCACCTGCGCCAGCGTGGAGTCGAGGACCTGGCGAACATCACGCTGTTCT
CGGACGGCACCACCGTCTACGAATGCACCTCCGCCGAAGAGGTCGTCGACCTGCTGCAGGGTGGGCAGGGAGTCTTCGGC
ATCGCGGTCAGCGGCGCCATGCGCGAGCTGACCGGCGCCATCGCCGAATTCCCCGGCGAGCGTGCCGACGGCGGCGAGGC
CATCGAGGCACCCGAGGACGAGCTGGCCTCCCGCCGCAAGGATCGCGCCCGCAAGATCGGCTGA

Upstream 100 bases:

>100_bases
ACGCACTACCGGCGGACTCGGATCCGTGGAATCTCTGTAGGGGATTTCCCAGGATCCGCGCCACGAGAGCCGGCGAAGCG
ATCGGCGAGAGGGAGCAGAA

Downstream 100 bases:

>100_bases
TCCGGTGGGCCGTTCCCGCCGGTCCAAACCAAGCCGTCAACTCGCGTAAACTGGTCGCGCATCGCCCGTGCGCGGGAGAG
TGTCATGACGGCCAGTCATG

Product: putative HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MVEQPQQGQLEMTLDNGAAGSVDSATTGPVQPGLFPDDSVPDQLVGYRGPSACQVAGITYRQLDYWARTSLVVPSIRSAA
GSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVEHLRQRGVEDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFG
IAVSGAMRELTGAIAEFPGERADGGEAIEAPEDELASRRKDRARKIG

Sequences:

>Translated_207_residues
MVEQPQQGQLEMTLDNGAAGSVDSATTGPVQPGLFPDDSVPDQLVGYRGPSACQVAGITYRQLDYWARTSLVVPSIRSAA
GSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVEHLRQRGVEDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFG
IAVSGAMRELTGAIAEFPGERADGGEAIEAPEDELASRRKDRARKIG
>Mature_207_residues
MVEQPQQGQLEMTLDNGAAGSVDSATTGPVQPGLFPDDSVPDQLVGYRGPSACQVAGITYRQLDYWARTSLVVPSIRSAA
GSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVEHLRQRGVEDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFG
IAVSGAMRELTGAIAEFPGERADGGEAIEAPEDELASRRKDRARKIG

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22109; Mature: 22109

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEQPQQGQLEMTLDNGAAGSVDSATTGPVQPGLFPDDSVPDQLVGYRGPSACQVAGITY
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCHH
RQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVEHLR
HHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QRGVEDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGAIAEFPGE
HHCHHHHHHEEEECCCCEEEEECCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCC
RADGGEAIEAPEDELASRRKDRARKIG
CCCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVEQPQQGQLEMTLDNGAAGSVDSATTGPVQPGLFPDDSVPDQLVGYRGPSACQVAGITY
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCHH
RQLDYWARTSLVVPSIRSAAGSGSQRLYSFKDILVLKIVKRLLDTGISLQNIRVAVEHLR
HHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QRGVEDLANITLFSDGTTVYECTSAEEVVDLLQGGQGVFGIAVSGAMRELTGAIAEFPGE
HHCHHHHHHEEEECCCCEEEEECCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCC
RADGGEAIEAPEDELASRRKDRARKIG
CCCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]