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The map label for this gene is ydeP [C]

Identifier: 169628683

GI number: 169628683

Start: 1620363

End: 1622699

Strand: Reverse

Name: ydeP [C]

Synonym: MAB_1593c

Alternate gene names: 169628683

Gene position: 1622699-1620363 (Counterclockwise)

Preceding gene: 169628690

Following gene: 169628682

Centisome position: 32.02

GC content: 64.1

Gene sequence:

>2337_bases
ATGACCGGGCACCGGATACCGACAGCCCATCACGACGGGCAGGCCGAACCCAGCGGAGACGCCGAGGCCGATATCGCCGT
TACCGGGGCCAAGAGCGTGGCGGCGGGACTGACGGCGGTCGGGGTTTCCCTGCAACGCGGTATCGAACAAATGGGACCGC
TACGCACCGCCGCGACACTGACCAAGCTGAATCAGCGTCACGGCTTTGATTGCCCCGGTTGCGCCTGGCCGGAGACCCCC
GGCCACCGCAAACTCGCTGAGTTCTGCGAAAACGGAGCCAAGGCCGTCGCCGAGGAGGCCACCACACGCACCGTCACCCC
CGCGTTCTTCGCAGAACACTCCGTCGAGGAACTTCGGCAGGCACCCGAATACTGGCTCAGCCAGCAAGGCCGCTTAACCC
ACCCGATGGTGCTGCGCCCGGGTGAAGCGCACTACCGCCCTATCGACTGGGACGACGCCTATGCGCTCATCGCCGACGAG
ATCAGGGCGGCCGACGACCCCGATCGGTTGGTTTTCTATACCTCGGGCCGTACCAGTAACGAGGCCGCATTCTGCTACCA
GCTGCTGGTCCGCAGCCTGGGCACCAACAACCTGCCCGACTGTTCCAACATGTGCCACGAATCGTCCGGCACGGCACTGA
CGGACTCGATCGGTATCGGCAAGGGCTCGGTGTCGGTGCCCGATGTTGAGCACGCCGACGTAATCCTCATCGCGGGCCAG
AACCCCGGCACCAACCATCCCCGCATGCTGTCCGTACTGGAAAAGGCGAAAGCCAACGGCGCCAAGATCATTGCCGTCAA
TCCGCTGCCCGAAGCGGGCCTACTCAGATTCAAGGATCCGCAAAAGGTCCACGGCGTCGTCGGCCATGGTGTGGCGATTG
CCGACGAGTTCGTGCAGATCCGCCTCGGCGGCGACATGGCATTGTTCGCAGGGCTCGGCAGACTGCTACTGGAGGCCGAA
GACGCCAGCCCGGGGCGCATCGTCGACCGGCGATTCATCGAAAAACACTGTGCGGGTTACGAAGAATGGGCCGAGCGCAC
ACGCGCCGTCGACTGGGAAACCGTCACCCGGGCAACGGGTATCGATATGGACCAGCTCCGGACCGTGGCCGACATGCTGG
CCAATTCACAGCGCACCATTTTCTGCTGGGCAATGGGGCTTACCCAGCACCGGCACGCGGTGGCCACCATCGGCGAGGCG
ACGAACCTGCTGTTGATGCGCGGCATGATCGGCAAGCCCGGTGCCGGGGTGTGCCCGGTGCGCGGCCACTCGAACGTCCA
GGGCGACCGCACCATGGGTATTTGGGAGAAGATGCCCGAATCATTTTTGGCCGCATTGGATTCCGAGTTCGGAATCTCCA
CGCCCCGCAAGCACGGGTTCGACACTGTCGACGCGATCCGGGCCATGCGGGACGGCAAGGTCGGTGTCTTCATCGGGATG
GGCGGCAACTTCGCCTCGGCGACGCCCGATACCGCCGTCACCGAGGCCGCGCTGCGCAACTGCTCCCTCACCGTGCAGAT
CTCCACCAAGCTCAACCGCAGCCACCTGGTGAACGGTCGCACCGCACTCATCCTGCCCACTCTCGGACGCACCGACAAAG
ACATCCAGAAGTCGGGTAAACAGCTTGTTTCCGTTGAGGATTCGATGTCCATGGTGCATCTTTCACGCGGCAGTCTGCAC
CCGCCGAGCACGCTGCTGCGCAGCGAGGTCGCCATCGTGTGCGAGCTGGCCCGGACAATCCTGGGACCCGCGCATCCCGT
GCCCTGGGAACGTTTCGCCGACGACTACGACACCATTCGCGACGCGATCTCACGGGTGGTACCCGGATGTGCCGACTACA
ACGCCAAGGTGCGCCGGCCGGACGGCTTTGCGCTGCCACACCCGCCACGTGACGATCGCCAGTTCCCCACCCACACGGGT
AAGGCCAACTTCTCCGCCGCACCGCTGGAGTGGGTGCCGGTGCCCGAAGGGCGTCTGGTACTGCAGACGTTACGCAGTCA
CGATCAATACAACACGACCATTTACGGGTTAGACGACCGCTATCGCGGCGTGAAGGGGGGTCGGCGCGTGGTCTTCGTCA
ACCCGGAAGACCTGACGGCATTTGGGTTGTCTGAGGGCTCGCGGGTTGATCTGGTGTCCGAATACCCGGGGTCCGACGGC
ACACTCGAGGAACGCCGGGCCGAGGACTTTCTTGTCGTACCCTATTCCACCCCGCGCGGCAATGCCGCCGCGTATTATCC
GGAAACCAATCCGCTTGTCCCCCTTGATCATGTCGCGGAAAGATCCAACACTCCGGTGTCCAAGGCCGTCGTGATCCGAT
TGGTCGCCCGTGGGTAG

Upstream 100 bases:

>100_bases
AGCCAAGCATCTGCTTGGTTACTCCCCCGCACCGTCCACCGCGGAAATGTCAGCAGGGGTTGTGGCGCCCGAATGGCACC
ACAGGTCCAGAATGAGAACC

Downstream 100 bases:

>100_bases
GGTCACCGACAGGCGCAAGGTCCGGCGCATCGAGGGCGTGGGGCGTGGCGACCGCAGCGAGACACTCGTGGTCGAGGAAC
CCCTGGAAATTCGGGTGAAC

Product: formate dehydrogenase, A chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 778; Mature: 777

Protein sequence:

>778_residues
MTGHRIPTAHHDGQAEPSGDAEADIAVTGAKSVAAGLTAVGVSLQRGIEQMGPLRTAATLTKLNQRHGFDCPGCAWPETP
GHRKLAEFCENGAKAVAEEATTRTVTPAFFAEHSVEELRQAPEYWLSQQGRLTHPMVLRPGEAHYRPIDWDDAYALIADE
IRAADDPDRLVFYTSGRTSNEAAFCYQLLVRSLGTNNLPDCSNMCHESSGTALTDSIGIGKGSVSVPDVEHADVILIAGQ
NPGTNHPRMLSVLEKAKANGAKIIAVNPLPEAGLLRFKDPQKVHGVVGHGVAIADEFVQIRLGGDMALFAGLGRLLLEAE
DASPGRIVDRRFIEKHCAGYEEWAERTRAVDWETVTRATGIDMDQLRTVADMLANSQRTIFCWAMGLTQHRHAVATIGEA
TNLLLMRGMIGKPGAGVCPVRGHSNVQGDRTMGIWEKMPESFLAALDSEFGISTPRKHGFDTVDAIRAMRDGKVGVFIGM
GGNFASATPDTAVTEAALRNCSLTVQISTKLNRSHLVNGRTALILPTLGRTDKDIQKSGKQLVSVEDSMSMVHLSRGSLH
PPSTLLRSEVAIVCELARTILGPAHPVPWERFADDYDTIRDAISRVVPGCADYNAKVRRPDGFALPHPPRDDRQFPTHTG
KANFSAAPLEWVPVPEGRLVLQTLRSHDQYNTTIYGLDDRYRGVKGGRRVVFVNPEDLTAFGLSEGSRVDLVSEYPGSDG
TLEERRAEDFLVVPYSTPRGNAAAYYPETNPLVPLDHVAERSNTPVSKAVVIRLVARG

Sequences:

>Translated_778_residues
MTGHRIPTAHHDGQAEPSGDAEADIAVTGAKSVAAGLTAVGVSLQRGIEQMGPLRTAATLTKLNQRHGFDCPGCAWPETP
GHRKLAEFCENGAKAVAEEATTRTVTPAFFAEHSVEELRQAPEYWLSQQGRLTHPMVLRPGEAHYRPIDWDDAYALIADE
IRAADDPDRLVFYTSGRTSNEAAFCYQLLVRSLGTNNLPDCSNMCHESSGTALTDSIGIGKGSVSVPDVEHADVILIAGQ
NPGTNHPRMLSVLEKAKANGAKIIAVNPLPEAGLLRFKDPQKVHGVVGHGVAIADEFVQIRLGGDMALFAGLGRLLLEAE
DASPGRIVDRRFIEKHCAGYEEWAERTRAVDWETVTRATGIDMDQLRTVADMLANSQRTIFCWAMGLTQHRHAVATIGEA
TNLLLMRGMIGKPGAGVCPVRGHSNVQGDRTMGIWEKMPESFLAALDSEFGISTPRKHGFDTVDAIRAMRDGKVGVFIGM
GGNFASATPDTAVTEAALRNCSLTVQISTKLNRSHLVNGRTALILPTLGRTDKDIQKSGKQLVSVEDSMSMVHLSRGSLH
PPSTLLRSEVAIVCELARTILGPAHPVPWERFADDYDTIRDAISRVVPGCADYNAKVRRPDGFALPHPPRDDRQFPTHTG
KANFSAAPLEWVPVPEGRLVLQTLRSHDQYNTTIYGLDDRYRGVKGGRRVVFVNPEDLTAFGLSEGSRVDLVSEYPGSDG
TLEERRAEDFLVVPYSTPRGNAAAYYPETNPLVPLDHVAERSNTPVSKAVVIRLVARG
>Mature_777_residues
TGHRIPTAHHDGQAEPSGDAEADIAVTGAKSVAAGLTAVGVSLQRGIEQMGPLRTAATLTKLNQRHGFDCPGCAWPETPG
HRKLAEFCENGAKAVAEEATTRTVTPAFFAEHSVEELRQAPEYWLSQQGRLTHPMVLRPGEAHYRPIDWDDAYALIADEI
RAADDPDRLVFYTSGRTSNEAAFCYQLLVRSLGTNNLPDCSNMCHESSGTALTDSIGIGKGSVSVPDVEHADVILIAGQN
PGTNHPRMLSVLEKAKANGAKIIAVNPLPEAGLLRFKDPQKVHGVVGHGVAIADEFVQIRLGGDMALFAGLGRLLLEAED
ASPGRIVDRRFIEKHCAGYEEWAERTRAVDWETVTRATGIDMDQLRTVADMLANSQRTIFCWAMGLTQHRHAVATIGEAT
NLLLMRGMIGKPGAGVCPVRGHSNVQGDRTMGIWEKMPESFLAALDSEFGISTPRKHGFDTVDAIRAMRDGKVGVFIGMG
GNFASATPDTAVTEAALRNCSLTVQISTKLNRSHLVNGRTALILPTLGRTDKDIQKSGKQLVSVEDSMSMVHLSRGSLHP
PSTLLRSEVAIVCELARTILGPAHPVPWERFADDYDTIRDAISRVVPGCADYNAKVRRPDGFALPHPPRDDRQFPTHTGK
ANFSAAPLEWVPVPEGRLVLQTLRSHDQYNTTIYGLDDRYRGVKGGRRVVFVNPEDLTAFGLSEGSRVDLVSEYPGSDGT
LEERRAEDFLVVPYSTPRGNAAAYYPETNPLVPLDHVAERSNTPVSKAVVIRLVARG

Specific function: Unknown

COG id: COG0243

COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI1787778, Length=756, Percent_Identity=43.5185185185185, Blast_Score=619, Evalue=1e-178,
Organism=Escherichia coli, GI3868721, Length=317, Percent_Identity=30.5993690851735, Blast_Score=157, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR006657
- InterPro:   IPR006656
- InterPro:   IPR010046 [H]

Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]

EC number: NA

Molecular weight: Translated: 84453; Mature: 84322

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGHRIPTAHHDGQAEPSGDAEADIAVTGAKSVAAGLTAVGVSLQRGIEQMGPLRTAATL
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TKLNQRHGFDCPGCAWPETPGHRKLAEFCENGAKAVAEEATTRTVTPAFFAEHSVEELRQ
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
APEYWLSQQGRLTHPMVLRPGEAHYRPIDWDDAYALIADEIRAADDPDRLVFYTSGRTSN
CHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCC
EAAFCYQLLVRSLGTNNLPDCSNMCHESSGTALTDSIGIGKGSVSVPDVEHADVILIAGQ
HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECC
NPGTNHPRMLSVLEKAKANGAKIIAVNPLPEAGLLRFKDPQKVHGVVGHGVAIADEFVQI
CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCHHHHHHHHCCHHEEEEEEEE
RLGGDMALFAGLGRLLLEAEDASPGRIVDRRFIEKHCAGYEEWAERTRAVDWETVTRATG
EECCCHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCC
IDMDQLRTVADMLANSQRTIFCWAMGLTQHRHAVATIGEATNLLLMRGMIGKPGAGVCPV
CCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RGHSNVQGDRTMGIWEKMPESFLAALDSEFGISTPRKHGFDTVDAIRAMRDGKVGVFIGM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
GGNFASATPDTAVTEAALRNCSLTVQISTKLNRSHLVNGRTALILPTLGRTDKDIQKSGK
CCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHCCCCCEEEEEECCCCCCHHHHHCCH
QLVSVEDSMSMVHLSRGSLHPPSTLLRSEVAIVCELARTILGPAHPVPWERFADDYDTIR
HEEEEHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHH
DAISRVVPGCADYNAKVRRPDGFALPHPPRDDRQFPTHTGKANFSAAPLEWVPVPEGRLV
HHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH
LQTLRSHDQYNTTIYGLDDRYRGVKGGRRVVFVNPEDLTAFGLSEGSRVDLVSEYPGSDG
HHHHHCCCCCCCEEEECCHHHCCCCCCCEEEEECCCCCEEECCCCCCEEEEEECCCCCCC
TLEERRAEDFLVVPYSTPRGNAAAYYPETNPLVPLDHVAERSNTPVSKAVVIRLVARG
CHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCCHHHHHHCCCCCHHHEEHHEEECCC
>Mature Secondary Structure 
TGHRIPTAHHDGQAEPSGDAEADIAVTGAKSVAAGLTAVGVSLQRGIEQMGPLRTAATL
CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TKLNQRHGFDCPGCAWPETPGHRKLAEFCENGAKAVAEEATTRTVTPAFFAEHSVEELRQ
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
APEYWLSQQGRLTHPMVLRPGEAHYRPIDWDDAYALIADEIRAADDPDRLVFYTSGRTSN
CHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCC
EAAFCYQLLVRSLGTNNLPDCSNMCHESSGTALTDSIGIGKGSVSVPDVEHADVILIAGQ
HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECC
NPGTNHPRMLSVLEKAKANGAKIIAVNPLPEAGLLRFKDPQKVHGVVGHGVAIADEFVQI
CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCEECCCCHHHHHHHHCCHHEEEEEEEE
RLGGDMALFAGLGRLLLEAEDASPGRIVDRRFIEKHCAGYEEWAERTRAVDWETVTRATG
EECCCHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCC
IDMDQLRTVADMLANSQRTIFCWAMGLTQHRHAVATIGEATNLLLMRGMIGKPGAGVCPV
CCHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
RGHSNVQGDRTMGIWEKMPESFLAALDSEFGISTPRKHGFDTVDAIRAMRDGKVGVFIGM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEC
GGNFASATPDTAVTEAALRNCSLTVQISTKLNRSHLVNGRTALILPTLGRTDKDIQKSGK
CCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHCCCCCEEEEEECCCCCCHHHHHCCH
QLVSVEDSMSMVHLSRGSLHPPSTLLRSEVAIVCELARTILGPAHPVPWERFADDYDTIR
HEEEEHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHH
DAISRVVPGCADYNAKVRRPDGFALPHPPRDDRQFPTHTGKANFSAAPLEWVPVPEGRLV
HHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHH
LQTLRSHDQYNTTIYGLDDRYRGVKGGRRVVFVNPEDLTAFGLSEGSRVDLVSEYPGSDG
HHHHHCCCCCCCEEEECCHHHCCCCCCCEEEEECCCCCEEECCCCCCEEEEEECCCCCCC
TLEERRAEDFLVVPYSTPRGNAAAYYPETNPLVPLDHVAERSNTPVSKAVVIRLVARG
CHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCCHHHHHHCCCCCHHHEEHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]