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The map label for this gene is ydeL [H]

Identifier: 169628446

GI number: 169628446

Start: 1352284

End: 1354092

Strand: Reverse

Name: ydeL [H]

Synonym: MAB_1353c

Alternate gene names: 169628446

Gene position: 1354092-1352284 (Counterclockwise)

Preceding gene: 169628448

Following gene: 169628444

Centisome position: 26.72

GC content: 64.68

Gene sequence:

>1809_bases
ATGAGAGTTGATCGTGCCTCTCGGCTGAGTATTCGCGCGCAGATCGTTCAACAATTGCGCAGTGCGCTGGAATCCGGTGT
ACTCGGCCCGGGATCGCCCGTGCCATCCAGTCGTGCGGTGGCCTCCGCATTGGGTGTGTCCAGAAGCACCGTAGTGGCGG
CGCTGCAGGAACTTGAAGGTGAAGGCTGGATCGAGTCCTCGCAGGGCTCGGGAACCGTCGTCTCCCACCGCCCGCACGCC
ACGAGCGACGTCGCGCGAGACCCAGCAGGATCCGCGACGATGTCTGATGAAGACATCGAAATCGATATGCGCCCAGGAGA
TCTCAACCCCGGAGATATCTCGCGGGTCGGATGGCGCGCGGCCTGGCGGTCGATAGAGCCTTCTACCACGCCTCCTCCGC
CGCCGGGCAGCGCGGCACTACGTGCGGCATTGTCCACCTACCTACGGTCCTCCCGCGGATTGCCATGCGACCCGTCGCAG
ATTGTGGTCTGCGCCGGAACTGCCGAAGCCCTGACACTTCTCACACTCGCTTTCCAATGGCGAGAGCGTGCGGTCGCCGT
CGAAGACCCCGGCTATCCCGACATACGCCGGACCTTCCAGACGCTCGGGGTGCGGTGGGTACCGGTCGACGTCACCGATG
CCGATCAGTTCCTGAGCGGGCTTCAATCCATCGAGAAGCCAATTGAGGCTGCGTATCTGACACCTAGCCATCAGTACCCG
CTAGGCCATCGAATCAGTCCCGGTGTACGCGGCGATATCTTGCGCTGGGCACGTGACGCGGGAGTGATCCTGGTGGAGGA
TGACTACGACAGCGAGTTCCGGTTCGGGGTAGCCCCGCTGCCCAGCCTGGCCGGTCTGGACACCACCGCGAGCACGATCT
ATCTGGGCACGATGTCGAAGGTCCTCGATCCGGGCCTGCGGCTCAGTTATCTACGCGTACCAACGCATCTGCTGCAGCCT
GTCCTTGATACCCGCGACGCACTGGGCGCAACCGTTTCCGCTCCCGTGCAACAAGCCGTCACCCACCTGCTCACCAGCGG
TGAGCTCGCGCGGCACATCGCCCGTGTCCGCAAGCTGTACCAAGACCGCCGCGCCACCATGTTGCAGTCCCTGGAAAAAA
TCGCCGCCGTCACTCACGTCACCGGAACCGAGGCCGGCCTGCACGTCTTGGCATCACTGCGCCAAGGCATTTCAGCATCA
GCGGCCGTGGAACAGGCCCGATCCCATCGGTATGCACATCACCGACCTCGACGACTACCGGGCCCGTCCCGACCCGTCGA
ATCCCGGGCTGGTCCTCGGATACGGACAGCTCAAACCGGCCACAATCCGGCACGCGGTCAACCGACTGGCCACCCTGCCC
GCATTACAGGAGGCCGACGGCCGGTAACGGGGGACAGGGCTCAGATCCAGACGCCCTTACCGACGGCGACCACGCCGCCC
GCGCTGACGTTGAAGCGTTCCCGGTCGCGCTCGATATCGACGCCAACCTGTTCGCCCACACCGACTACCACGTTCTTGTC
CAGAATCGCGTGCCGCACCACGGCGCCGCGCCCCACCCGCACGCCGGGCATCAGCACACTGCCCTCGACGACGGCGCCGT
CGTCGATCACGACGTTGGAGGACAGCACCGAATTACGCACCGACGCAGCAGACACGATGCTGCCGGCCCCCACCACCGAC
TCTTGCGCCGATCCCCCGTTGACGAACTTGGCGGGCGCCAGGTTCTCCGATTCACCGCGGATCGGCCAGCGCCGGTTGTA
CAGATTGAACACCGGATGCACCGACACCAGATCCATGTGCGCGTCATAG

Upstream 100 bases:

>100_bases
ACGACAGACCACATTCGGTGATTTCAACCAGTCCAGTGCGGTGTGAAATGATACGGGTCACCTGCGGCGGCGAGGTGTTG
TCTTGACTCTGAACATCCCG

Downstream 100 bases:

>100_bases
AACGCGTCCAGGGTTCCGACATCGCGCCAGTAGGCGTGATCACGCTCGGTGGCTCCGGGGACCAGGTTGGTGTTGAAGTC
GTAGACTGCCGCGCGGCCGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 602; Mature: 602

Protein sequence:

>602_residues
MRVDRASRLSIRAQIVQQLRSALESGVLGPGSPVPSSRAVASALGVSRSTVVAALQELEGEGWIESSQGSGTVVSHRPHA
TSDVARDPAGSATMSDEDIEIDMRPGDLNPGDISRVGWRAAWRSIEPSTTPPPPPGSAALRAALSTYLRSSRGLPCDPSQ
IVVCAGTAEALTLLTLAFQWRERAVAVEDPGYPDIRRTFQTLGVRWVPVDVTDADQFLSGLQSIEKPIEAAYLTPSHQYP
LGHRISPGVRGDILRWARDAGVILVEDDYDSEFRFGVAPLPSLAGLDTTASTIYLGTMSKVLDPGLRLSYLRVPTHLLQP
VLDTRDALGATVSAPVQQAVTHLLTSGELARHIARVRKLYQDRRATMLQSLEKIAAVTHVTGTEAGLHVLASLRQGISAS
AAVEQARSHRYAHHRPRRLPGPSRPVESRAGPRIRTAQTGHNPARGQPTGHPARITGGRRPVTGDRAQIQTPLPTATTPP
ALTLKRSRSRSISTPTCSPTPTTTFLSRIACRTTAPRPTRTPGISTLPSTTAPSSITTLEDSTELRTDAADTMLPAPTTD
SCADPPLTNLAGARFSDSPRIGQRRLYRLNTGCTDTRSMCAS

Sequences:

>Translated_602_residues
MRVDRASRLSIRAQIVQQLRSALESGVLGPGSPVPSSRAVASALGVSRSTVVAALQELEGEGWIESSQGSGTVVSHRPHA
TSDVARDPAGSATMSDEDIEIDMRPGDLNPGDISRVGWRAAWRSIEPSTTPPPPPGSAALRAALSTYLRSSRGLPCDPSQ
IVVCAGTAEALTLLTLAFQWRERAVAVEDPGYPDIRRTFQTLGVRWVPVDVTDADQFLSGLQSIEKPIEAAYLTPSHQYP
LGHRISPGVRGDILRWARDAGVILVEDDYDSEFRFGVAPLPSLAGLDTTASTIYLGTMSKVLDPGLRLSYLRVPTHLLQP
VLDTRDALGATVSAPVQQAVTHLLTSGELARHIARVRKLYQDRRATMLQSLEKIAAVTHVTGTEAGLHVLASLRQGISAS
AAVEQARSHRYAHHRPRRLPGPSRPVESRAGPRIRTAQTGHNPARGQPTGHPARITGGRRPVTGDRAQIQTPLPTATTPP
ALTLKRSRSRSISTPTCSPTPTTTFLSRIACRTTAPRPTRTPGISTLPSTTAPSSITTLEDSTELRTDAADTMLPAPTTD
SCADPPLTNLAGARFSDSPRIGQRRLYRLNTGCTDTRSMCAS
>Mature_602_residues
MRVDRASRLSIRAQIVQQLRSALESGVLGPGSPVPSSRAVASALGVSRSTVVAALQELEGEGWIESSQGSGTVVSHRPHA
TSDVARDPAGSATMSDEDIEIDMRPGDLNPGDISRVGWRAAWRSIEPSTTPPPPPGSAALRAALSTYLRSSRGLPCDPSQ
IVVCAGTAEALTLLTLAFQWRERAVAVEDPGYPDIRRTFQTLGVRWVPVDVTDADQFLSGLQSIEKPIEAAYLTPSHQYP
LGHRISPGVRGDILRWARDAGVILVEDDYDSEFRFGVAPLPSLAGLDTTASTIYLGTMSKVLDPGLRLSYLRVPTHLLQP
VLDTRDALGATVSAPVQQAVTHLLTSGELARHIARVRKLYQDRRATMLQSLEKIAAVTHVTGTEAGLHVLASLRQGISAS
AAVEQARSHRYAHHRPRRLPGPSRPVESRAGPRIRTAQTGHNPARGQPTGHPARITGGRRPVTGDRAQIQTPLPTATTPP
ALTLKRSRSRSISTPTCSPTPTTTFLSRIACRTTAPRPTRTPGISTLPSTTAPSSITTLEDSTELRTDAADTMLPAPTTD
SCADPPLTNLAGARFSDSPRIGQRRLYRLNTGCTDTRSMCAS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=427, Percent_Identity=27.4004683840749, Blast_Score=104, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 64449; Mature: 64449

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVDRASRLSIRAQIVQQLRSALESGVLGPGSPVPSSRAVASALGVSRSTVVAALQELEG
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
EGWIESSQGSGTVVSHRPHATSDVARDPAGSATMSDEDIEIDMRPGDLNPGDISRVGWRA
CCCEECCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
AWRSIEPSTTPPPPPGSAALRAALSTYLRSSRGLPCDPSQIVVCAGTAEALTLLTLAFQW
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
RERAVAVEDPGYPDIRRTFQTLGVRWVPVDVTDADQFLSGLQSIEKPIEAAYLTPSHQYP
HHCEEEECCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHEECCCCCCCC
LGHRISPGVRGDILRWARDAGVILVEDDYDSEFRFGVAPLPSLAGLDTTASTIYLGTMSK
CCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCEECCCCCCCCCCCCCCHHEEEHHHHHH
VLDPGLRLSYLRVPTHLLQPVLDTRDALGATVSAPVQQAVTHLLTSGELARHIARVRKLY
HHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
QDRRATMLQSLEKIAAVTHVTGTEAGLHVLASLRQGISASAAVEQARSHRYAHHRPRRLP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
GPSRPVESRAGPRIRTAQTGHNPARGQPTGHPARITGGRRPVTGDRAQIQTPLPTATTPP
CCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCCCCCCCC
ALTLKRSRSRSISTPTCSPTPTTTFLSRIACRTTAPRPTRTPGISTLPSTTAPSSITTLE
CEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECC
DSTELRTDAADTMLPAPTTDSCADPPLTNLAGARFSDSPRIGQRRLYRLNTGCTDTRSMC
CCHHHHHCHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHEEEECCCCCHHHHHH
AS
CC
>Mature Secondary Structure
MRVDRASRLSIRAQIVQQLRSALESGVLGPGSPVPSSRAVASALGVSRSTVVAALQELEG
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
EGWIESSQGSGTVVSHRPHATSDVARDPAGSATMSDEDIEIDMRPGDLNPGDISRVGWRA
CCCEECCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
AWRSIEPSTTPPPPPGSAALRAALSTYLRSSRGLPCDPSQIVVCAGTAEALTLLTLAFQW
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
RERAVAVEDPGYPDIRRTFQTLGVRWVPVDVTDADQFLSGLQSIEKPIEAAYLTPSHQYP
HHCEEEECCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHEECCCCCCCC
LGHRISPGVRGDILRWARDAGVILVEDDYDSEFRFGVAPLPSLAGLDTTASTIYLGTMSK
CCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCEECCCCCCCCCCCCCCHHEEEHHHHHH
VLDPGLRLSYLRVPTHLLQPVLDTRDALGATVSAPVQQAVTHLLTSGELARHIARVRKLY
HHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
QDRRATMLQSLEKIAAVTHVTGTEAGLHVLASLRQGISASAAVEQARSHRYAHHRPRRLP
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
GPSRPVESRAGPRIRTAQTGHNPARGQPTGHPARITGGRRPVTGDRAQIQTPLPTATTPP
CCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEECCCCCCCCCCC
ALTLKRSRSRSISTPTCSPTPTTTFLSRIACRTTAPRPTRTPGISTLPSTTAPSSITTLE
CEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECC
DSTELRTDAADTMLPAPTTDSCADPPLTNLAGARFSDSPRIGQRRLYRLNTGCTDTRSMC
CCHHHHHCHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHEEEECCCCCHHHHHH
AS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]