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The map label for this gene is ydiP [C]

Identifier: 169628406

GI number: 169628406

Start: 1313963

End: 1314772

Strand: Direct

Name: ydiP [C]

Synonym: MAB_1313

Alternate gene names: 169628406

Gene position: 1313963-1314772 (Clockwise)

Preceding gene: 169628405

Following gene: 169628407

Centisome position: 25.93

GC content: 60.0

Gene sequence:

>810_bases
ATGGTTTTCGGGGGTTTTGGGGGTGTTGCATTGGGTGAGCTGCAGATCACGTTTGTCAGCGAGCCGATTGTTGAGCCCAC
GGAGTGGTACTTCGACGAGCCCCATCATGTGGTCGCCGTGTACCAAGGCGGACGAATCCTTTCCAAGGAGATCGATTTCG
TAGACGGCCTGTCCCGGCGGTACCTGCCCAAGGTTGGTGATGTCCTGGTTGTTCCCATGGGCAGCCGCGCTGCCATCACC
ACACAAGGAGAGCGTGCTTCGTTCTGCCGCTTCGATATTCCGACGAGGTTGCTCGACCAGCGAGACCTGCAGCCCAGGGT
GGCTTATTCAGATCCGCTGATACTGCAGCTGGCATCGAGGATGTACAGCGTCGCCGATCGCACCGATGTGATCGCGCGAT
TGTTGCGTGAGTCTTTGGCGGACGTCGTGCGACTGCATCTCAGTGACCATTACGCCGCACTTCGCCCGCGGCCGGAACGT
CGCCGGCTGCTGGACTCTGCGATGCAGGCCCGGGTGACCGAGTACATCGAGGATGGTCTGGACGCGGACATCAGCTTGTC
GGCACTGGCCGGTCATGCGCAGATGTCCACGAGCGAGTTCCGCAAGGCCTTCACCGAGGTGTTCGGCCACACGCCGTATC
AGTTCGTCCTGGACCGCAGGATGAGCCGGGCCAAGCAACTACTTGCGACTACCGATCTGTCCGTTACGGATATCAGTGTT
GCCGTGGGTTTTTCGAGCCCTAGCCATTTCGCCACCACCTTCAAGACCCGTATCGGCGTGACACCGACGGCTTATCGCAG
CGGTGTATGA

Upstream 100 bases:

>100_bases
TTCGCGCGGCTGGTCTCGGTGCTTGATGAACCCGATCCAGGTTTTGCGATCGTGACGCCGTAGCCGGATGCGCGCATGTT
GCCGCTAGCATTGGACGACA

Downstream 100 bases:

>100_bases
CTCATTTTCCGCAATATGCGCCAGATTTCGAAGGCGCCGCAACATCGCTCTTGCCTACAGTGGCCGGACGTGGTCACGGG
GGACGTGATCGCGAGGGTCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MVFGGFGGVALGELQITFVSEPIVEPTEWYFDEPHHVVAVYQGGRILSKEIDFVDGLSRRYLPKVGDVLVVPMGSRAAIT
TQGERASFCRFDIPTRLLDQRDLQPRVAYSDPLILQLASRMYSVADRTDVIARLLRESLADVVRLHLSDHYAALRPRPER
RRLLDSAMQARVTEYIEDGLDADISLSALAGHAQMSTSEFRKAFTEVFGHTPYQFVLDRRMSRAKQLLATTDLSVTDISV
AVGFSSPSHFATTFKTRIGVTPTAYRSGV

Sequences:

>Translated_269_residues
MVFGGFGGVALGELQITFVSEPIVEPTEWYFDEPHHVVAVYQGGRILSKEIDFVDGLSRRYLPKVGDVLVVPMGSRAAIT
TQGERASFCRFDIPTRLLDQRDLQPRVAYSDPLILQLASRMYSVADRTDVIARLLRESLADVVRLHLSDHYAALRPRPER
RRLLDSAMQARVTEYIEDGLDADISLSALAGHAQMSTSEFRKAFTEVFGHTPYQFVLDRRMSRAKQLLATTDLSVTDISV
AVGFSSPSHFATTFKTRIGVTPTAYRSGV
>Mature_269_residues
MVFGGFGGVALGELQITFVSEPIVEPTEWYFDEPHHVVAVYQGGRILSKEIDFVDGLSRRYLPKVGDVLVVPMGSRAAIT
TQGERASFCRFDIPTRLLDQRDLQPRVAYSDPLILQLASRMYSVADRTDVIARLLRESLADVVRLHLSDHYAALRPRPER
RRLLDSAMQARVTEYIEDGLDADISLSALAGHAQMSTSEFRKAFTEVFGHTPYQFVLDRRMSRAKQLLATTDLSVTDISV
AVGFSSPSHFATTFKTRIGVTPTAYRSGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29998; Mature: 29998

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFGGFGGVALGELQITFVSEPIVEPTEWYFDEPHHVVAVYQGGRILSKEIDFVDGLSRR
CEECCCCCEEEEEEEEEEECCCCCCCHHHHCCCCCEEEEEEECCEEEHHHHHHHHHHHHH
YLPKVGDVLVVPMGSRAAITTQGERASFCRFDIPTRLLDQRDLQPRVAYSDPLILQLASR
CCCCCCCEEEEECCCCEEEEECCCCCCEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHH
MYSVADRTDVIARLLRESLADVVRLHLSDHYAALRPRPERRRLLDSAMQARVTEYIEDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
DADISLSALAGHAQMSTSEFRKAFTEVFGHTPYQFVLDRRMSRAKQLLATTDLSVTDISV
CCCEEHHHHHCCHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
AVGFSSPSHFATTFKTRIGVTPTAYRSGV
EEECCCCCHHHHHHHHHCCCCCCHHCCCC
>Mature Secondary Structure
MVFGGFGGVALGELQITFVSEPIVEPTEWYFDEPHHVVAVYQGGRILSKEIDFVDGLSRR
CEECCCCCEEEEEEEEEEECCCCCCCHHHHCCCCCEEEEEEECCEEEHHHHHHHHHHHHH
YLPKVGDVLVVPMGSRAAITTQGERASFCRFDIPTRLLDQRDLQPRVAYSDPLILQLASR
CCCCCCCEEEEECCCCEEEEECCCCCCEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHH
MYSVADRTDVIARLLRESLADVVRLHLSDHYAALRPRPERRRLLDSAMQARVTEYIEDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
DADISLSALAGHAQMSTSEFRKAFTEVFGHTPYQFVLDRRMSRAKQLLATTDLSVTDISV
CCCEEHHHHHCCHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
AVGFSSPSHFATTFKTRIGVTPTAYRSGV
EEECCCCCHHHHHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]