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The map label for this gene is ydcN [C]

Identifier: 169628144

GI number: 169628144

Start: 1057484

End: 1058005

Strand: Direct

Name: ydcN [C]

Synonym: MAB_1049

Alternate gene names: 169628144

Gene position: 1057484-1058005 (Clockwise)

Preceding gene: 169628140

Following gene: 169628149

Centisome position: 20.87

GC content: 61.49

Gene sequence:

>522_bases
ATGGCATCGCTGGTTCGCGCGCTGCGCCGGGAGCGTGGCCTCACCCTGGAGGAACTGGGTAGTCGTACCGGTCTGACCAA
GAGCTATCTCTCGAAAGTCGAGCGAGAACACAGCACTCCGTCGGTATCGGTAGCGATGCGCATCGCGGGGGCTCTCGATG
TCGACGTGAGCCGGCTGTTCACCAACGATGCGTACGAGTCTCGGGTGGTGGTGGATCGCGGTGCCGACGAGTGGGATGAC
GGTAAGTTCCATGCGCTGAGCACCGAGATGCTCGGCAAGATCATGACGCCGTTTCTGGCGAGTCCGTCAACCGAATTCGC
GGAACACAAGTCGTCGCATGAAGGTCAGGAATTCGTGTTCGTCCACCGCGGATCGATCGAACTGCAGTGCGGCCAAGACG
ATGAGGTGGTGAGTTACGAGCTGGATGAAGGGGATAGCGCTTATCTCGATGCCACCCGCACCCACCGGATACGCCGGACG
TCCGAGACCCCGGCGCTTGTGGTGATCGTCGCCGCGACCTAG

Upstream 100 bases:

>100_bases
CTGGTCTCGGTGGGTGGACATCACGATAGGACACAAGGTGTCATATCGTCAACAGTGTTGCATCGCGAACGCCGCGGACA
CCTCGTGTCACACTGACGGG

Downstream 100 bases:

>100_bases
CGATTACGTGGGACGGAAGTTCATCGCGGCACCGTTCATGCAATAGCGCAGCCCGGTCGGTTTGGGCCCGTCGTCGAACA
CATGGCCCAGATGTCCCGCA

Product: putative transcription regulator protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cro/CI Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator Protein; XRE Family-Like Protein; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Merr Family; Cupin 2 Conserved Barrel Domain Protein; HTH_3family Transcriptional Regulator; Helix-Turn-Helix Family Protein

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MASLVRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLFTNDAYESRVVVDRGADEWDD
GKFHALSTEMLGKIMTPFLASPSTEFAEHKSSHEGQEFVFVHRGSIELQCGQDDEVVSYELDEGDSAYLDATRTHRIRRT
SETPALVVIVAAT

Sequences:

>Translated_173_residues
MASLVRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLFTNDAYESRVVVDRGADEWDD
GKFHALSTEMLGKIMTPFLASPSTEFAEHKSSHEGQEFVFVHRGSIELQCGQDDEVVSYELDEGDSAYLDATRTHRIRRT
SETPALVVIVAAT
>Mature_172_residues
ASLVRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLFTNDAYESRVVVDRGADEWDDG
KFHALSTEMLGKIMTPFLASPSTEFAEHKSSHEGQEFVFVHRGSIELQCGQDDEVVSYELDEGDSAYLDATRTHRIRRTS
ETPALVVIVAAT

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19176; Mature: 19044

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLVRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLF
CHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHCCCCHHHHHHH
TNDAYESRVVVDRGADEWDDGKFHALSTEMLGKIMTPFLASPSTEFAEHKSSHEGQEFVF
CCCCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEE
VHRGSIELQCGQDDEVVSYELDEGDSAYLDATRTHRIRRTSETPALVVIVAAT
EECCEEEEEECCCCCEEEEECCCCCCEEECCHHHHHHHCCCCCCEEEEEEECC
>Mature Secondary Structure 
ASLVRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLF
HHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHCCCCHHHHHHH
TNDAYESRVVVDRGADEWDDGKFHALSTEMLGKIMTPFLASPSTEFAEHKSSHEGQEFVF
CCCCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEE
VHRGSIELQCGQDDEVVSYELDEGDSAYLDATRTHRIRRTSETPALVVIVAAT
EECCEEEEEECCCCCEEEEECCCCCCEEECCHHHHHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA