| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is ydfG [C]
Identifier: 169628134
GI number: 169628134
Start: 1048528
End: 1049277
Strand: Direct
Name: ydfG [C]
Synonym: MAB_1039
Alternate gene names: 169628134
Gene position: 1048528-1049277 (Clockwise)
Preceding gene: 169628133
Following gene: 169628135
Centisome position: 20.69
GC content: 66.27
Gene sequence:
>750_bases GTGACGCGACAGAAGATCCTCATCACCGGGGCGAGCTCCGGCCTGGGTGCCGAGATGGCCCGTCAGTTCGCTGCGAAGGG ACGGGACCTGGCGCTGTGCGCCCGGCGCACCGAGGCGCTCGAAGAACTCAAGGCAGAGTTGCTGGGCGCCAACCCGGGAA TCAAGGTCGCGGTGCGGGCGCTGGACGTCACCAACCACGAATCCGTGCCGGTCGTATTCGGCGAGCTGCGCGACGAGCTC GGCGGCCTGGATCGGGTAGTGGTCAACGCCGGCATCGCCAAGGGTTGGCACCTCGGTGGCGGCAAGTCGTGGGCCAACAT CCAGACCATCGAAACCAACCTCATCGGTGCACTGGTACAGATCGAGGCGGCGCTAGCCCTGTTCAAGGAACAGGGCTACG GGCACCTGGTCCTCATCTCCTCGGTGACAGCGGCCAAGGGGCTGCCTGGCACCAAAGCCGCCTATGCGGCCAGCAAGGCC GGACTTTCCTCGCTGGGTGAATCACTGCGATCCGAATATGCCCGCGGCCCAATCAAAGTCAGCACCATTGAGCCTGGCTA CATACAGACCGATCTGAGCGCCAAGTCGCCGACCACCCCGATGATGGTCGACACACTGACCGGCGTGACGGCAATGGTGA ACGCCATCGAGAAGGAGCCCGGCCGCGCGGCGGTGCCGCGATGGCCGTGGGAACCGGTGATGGCGGTCATGCGGTTGCTG CCGCCCCGGCTGGCGGGGCGCCTCGCGTAA
Upstream 100 bases:
>100_bases ATTCGCCGATAAGTCGTTCCAGTATTGCCCGACCTGCCAGACCGGTGGCAAGGTGCTAGCCGACCGTCGGCTCTCGCGAC TGCTCAAATAAAGTGGCAAC
Downstream 100 bases:
>100_bases TCGGCCGAGGGTTTCCCACATGGGACTTTGTGCCCACGTGGGATGCTGAACCCATGGCCGATCAAGAGAAACCGAACACT TCAGTCACGGTGGACTACGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MTRQKILITGASSGLGAEMARQFAAKGRDLALCARRTEALEELKAELLGANPGIKVAVRALDVTNHESVPVVFGELRDEL GGLDRVVVNAGIAKGWHLGGGKSWANIQTIETNLIGALVQIEAALALFKEQGYGHLVLISSVTAAKGLPGTKAAYAASKA GLSSLGESLRSEYARGPIKVSTIEPGYIQTDLSAKSPTTPMMVDTLTGVTAMVNAIEKEPGRAAVPRWPWEPVMAVMRLL PPRLAGRLA
Sequences:
>Translated_249_residues MTRQKILITGASSGLGAEMARQFAAKGRDLALCARRTEALEELKAELLGANPGIKVAVRALDVTNHESVPVVFGELRDEL GGLDRVVVNAGIAKGWHLGGGKSWANIQTIETNLIGALVQIEAALALFKEQGYGHLVLISSVTAAKGLPGTKAAYAASKA GLSSLGESLRSEYARGPIKVSTIEPGYIQTDLSAKSPTTPMMVDTLTGVTAMVNAIEKEPGRAAVPRWPWEPVMAVMRLL PPRLAGRLA >Mature_248_residues TRQKILITGASSGLGAEMARQFAAKGRDLALCARRTEALEELKAELLGANPGIKVAVRALDVTNHESVPVVFGELRDELG GLDRVVVNAGIAKGWHLGGGKSWANIQTIETNLIGALVQIEAALALFKEQGYGHLVLISSVTAAKGLPGTKAAYAASKAG LSSLGESLRSEYARGPIKVSTIEPGYIQTDLSAKSPTTPMMVDTLTGVTAMVNAIEKEPGRAAVPRWPWEPVMAVMRLLP PRLAGRLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=35.3535353535354, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI109715829, Length=195, Percent_Identity=31.2820512820513, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI40254992, Length=186, Percent_Identity=31.1827956989247, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI7657478, Length=202, Percent_Identity=33.6633663366337, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI210032110, Length=243, Percent_Identity=26.3374485596708, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI32455239, Length=197, Percent_Identity=30.4568527918782, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI5031765, Length=197, Percent_Identity=30.4568527918782, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=31, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI157739938, Length=188, Percent_Identity=28.7234042553192, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI19743808, Length=206, Percent_Identity=29.6116504854369, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI150247226, Length=200, Percent_Identity=33.5, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI142976729, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI22507405, Length=202, Percent_Identity=27.7227722772277, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=30.6451612903226, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787335, Length=190, Percent_Identity=34.7368421052632, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=32.9842931937173, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786701, Length=264, Percent_Identity=29.9242424242424, Blast_Score=64, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17508895, Length=252, Percent_Identity=26.1904761904762, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193203115, Length=251, Percent_Identity=27.8884462151394, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI193203117, Length=251, Percent_Identity=27.8884462151394, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17570069, Length=196, Percent_Identity=31.1224489795918, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17564282, Length=245, Percent_Identity=25.7142857142857, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71997402, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115534660, Length=193, Percent_Identity=30.0518134715026, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17559962, Length=217, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=30.8080808080808, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=30.8080808080808, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17544670, Length=207, Percent_Identity=27.536231884058, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17560676, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=223, Percent_Identity=33.6322869955157, Blast_Score=99, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6322227, Length=197, Percent_Identity=28.9340101522843, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=34.3589743589744, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=31.2820512820513, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI28571387, Length=196, Percent_Identity=33.6734693877551, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24641232, Length=199, Percent_Identity=30.1507537688442, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24648693, Length=210, Percent_Identity=30.952380952381, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI21355889, Length=210, Percent_Identity=30.952380952381, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI24641388, Length=212, Percent_Identity=31.6037735849057, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI116007238, Length=196, Percent_Identity=30.1020408163265, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24663911, Length=194, Percent_Identity=30.4123711340206, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI116007234, Length=195, Percent_Identity=30.2564102564103, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24648944, Length=198, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364494, Length=198, Percent_Identity=29.2929292929293, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24644339, Length=195, Percent_Identity=31.7948717948718, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24580925, Length=210, Percent_Identity=29.0476190476191, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI23397609, Length=198, Percent_Identity=31.3131313131313, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26244; Mature: 26113
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRQKILITGASSGLGAEMARQFAAKGRDLALCARRTEALEELKAELLGANPGIKVAVRA CCCCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE LDVTNHESVPVVFGELRDELGGLDRVVVNAGIAKGWHLGGGKSWANIQTIETNLIGALVQ EECCCCCCCCHHHHHHHHHHCCHHEEEHHCCCCCCEECCCCCCCCCEEEHHHHHHHHHHH IEAALALFKEQGYGHLVLISSVTAAKGLPGTKAAYAASKAGLSSLGESLRSEYARGPIKV HHHHHHHHHHCCCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE STIEPGYIQTDLSAKSPTTPMMVDTLTGVTAMVNAIEKEPGRAAVPRWPWEPVMAVMRLL EEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC PPRLAGRLA CHHHHCCCC >Mature Secondary Structure TRQKILITGASSGLGAEMARQFAAKGRDLALCARRTEALEELKAELLGANPGIKVAVRA CCCEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE LDVTNHESVPVVFGELRDELGGLDRVVVNAGIAKGWHLGGGKSWANIQTIETNLIGALVQ EECCCCCCCCHHHHHHHHHHCCHHEEEHHCCCCCCEECCCCCCCCCEEEHHHHHHHHHHH IEAALALFKEQGYGHLVLISSVTAAKGLPGTKAAYAASKAGLSSLGESLRSEYARGPIKV HHHHHHHHHHCCCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE STIEPGYIQTDLSAKSPTTPMMVDTLTGVTAMVNAIEKEPGRAAVPRWPWEPVMAVMRLL EEECCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC PPRLAGRLA CHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]