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The map label for this gene is yfdE [H]

Identifier: 169627944

GI number: 169627944

Start: 839584

End: 840675

Strand: Direct

Name: yfdE [H]

Synonym: MAB_0845

Alternate gene names: 169627944

Gene position: 839584-840675 (Clockwise)

Preceding gene: 169627943

Following gene: 169627945

Centisome position: 16.57

GC content: 65.29

Gene sequence:

>1092_bases
ATGGCTGACACTGGCGTCAAGACGGGCCCCCTGGCGGGCGTGAAGGTGATCGAGCTCGGCGGGATCGGCCCTGGGCCGCA
TGCGGCGATGATGTTGTCGGACCTGGGTGCCGACGTCATCCGGGTGCGCCGGCCGGGCGGGCTCGCCATCCCCGCCGAGG
AGACCGACCTGTTCCACCGCGGCAAGCGGCTGGTCAATCTGGACGTCAAGAAGGACCCCGAGGCGCTGCTGGCCCTGGTC
GATAAGGCCGATGTGCTGCTGGATCCGTTTCGTCCCGGCGTATGTGAGCGCATCGGGATCGGACCCGAGGAGTGCGCCAA
GCGGAACCCGCGGCTGATCTTCGCCCGGATGACCGGCTGGGGACAGCACGGCCCGATGGCAGACCGTGCCGGGCACGACA
TCAACTACCTGTCGCTGACCGGAGCCCTCGGCTCGATGGGTTACAAGGACCGCCCGCCGATGCCGCCCATGAATCTGGTG
GCGGACTTTGGCGGTGGCTCAATGCTTTTGGTGCAAGGCATCCTGGCCGCGCTGTATGAGCGCGAAAAGTCGGGCAAGGG
CCAGGTCATCGATGGCGCAATGGTCGACGGAGTGAGCCAGCTGGCTCAGATGCAGTGGACGATGTACAACAACGGTCTGC
TCTTCGACGAGCGTGAGGCCGGACTGCTCGACGGTGGCTCGCCCTTCTACGGGACGTACGAAACATCCGATGGCAAGTAC
ATGGCGGTGGGTTCTATTGAGCCGCAGTTCTTCGCGATCTTGGTGCAGGGTTTGGGGCTGGATCCAGAGAGTGTGCCGTT
CCAGCTCGACAAGGCGCGCTACCCGGAGATGCGCAAGATGTTCGACGACGCCTTCAAGACCAAGACGCGCGACGAGTGGA
CCGAGATTTTCATCGGCACCGACGCGTGCGTATCACCGGTGCTCACCTGGGGCGAGGCCAAGCAGAACGAGCACCTTCGT
GATCGCGGCACCATCGTTGACGTGGACGGGGTGACTCAGGCGGCGCCGGCCCCGCGCTTTTCGCGGACGCCGAGCGGGCC
CCTTGGAGCTCCCCCGAAGGACACGACGGAGCTCTCCGATATCGGCTGGTGA

Upstream 100 bases:

>100_bases
GACTCCGGCGCCGGCGCCCACGCAGACGTCGTCGCCGGCCATCTCCTCGTCGCTGTAGCCGCACTTCCCAACCAACGGGT
TGACTGGCTAGGGTGGCCCC

Downstream 100 bases:

>100_bases
TTTAGCCGGGATTGTCGGTACTAGGTACTGGTAGTCTCACTCCAGGCAATGACGCTATGAGGAGGCTTGATGACCAGTGC
CCGACATGCCGCCGATTCCC

Product: fatty-acid-CoA racemase Far

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MADTGVKTGPLAGVKVIELGGIGPGPHAAMMLSDLGADVIRVRRPGGLAIPAEETDLFHRGKRLVNLDVKKDPEALLALV
DKADVLLDPFRPGVCERIGIGPEECAKRNPRLIFARMTGWGQHGPMADRAGHDINYLSLTGALGSMGYKDRPPMPPMNLV
ADFGGGSMLLVQGILAALYEREKSGKGQVIDGAMVDGVSQLAQMQWTMYNNGLLFDEREAGLLDGGSPFYGTYETSDGKY
MAVGSIEPQFFAILVQGLGLDPESVPFQLDKARYPEMRKMFDDAFKTKTRDEWTEIFIGTDACVSPVLTWGEAKQNEHLR
DRGTIVDVDGVTQAAPAPRFSRTPSGPLGAPPKDTTELSDIGW

Sequences:

>Translated_363_residues
MADTGVKTGPLAGVKVIELGGIGPGPHAAMMLSDLGADVIRVRRPGGLAIPAEETDLFHRGKRLVNLDVKKDPEALLALV
DKADVLLDPFRPGVCERIGIGPEECAKRNPRLIFARMTGWGQHGPMADRAGHDINYLSLTGALGSMGYKDRPPMPPMNLV
ADFGGGSMLLVQGILAALYEREKSGKGQVIDGAMVDGVSQLAQMQWTMYNNGLLFDEREAGLLDGGSPFYGTYETSDGKY
MAVGSIEPQFFAILVQGLGLDPESVPFQLDKARYPEMRKMFDDAFKTKTRDEWTEIFIGTDACVSPVLTWGEAKQNEHLR
DRGTIVDVDGVTQAAPAPRFSRTPSGPLGAPPKDTTELSDIGW
>Mature_362_residues
ADTGVKTGPLAGVKVIELGGIGPGPHAAMMLSDLGADVIRVRRPGGLAIPAEETDLFHRGKRLVNLDVKKDPEALLALVD
KADVLLDPFRPGVCERIGIGPEECAKRNPRLIFARMTGWGQHGPMADRAGHDINYLSLTGALGSMGYKDRPPMPPMNLVA
DFGGGSMLLVQGILAALYEREKSGKGQVIDGAMVDGVSQLAQMQWTMYNNGLLFDEREAGLLDGGSPFYGTYETSDGKYM
AVGSIEPQFFAILVQGLGLDPESVPFQLDKARYPEMRKMFDDAFKTKTRDEWTEIFIGTDACVSPVLTWGEAKQNEHLRD
RGTIVDVDGVTQAAPAPRFSRTPSGPLGAPPKDTTELSDIGW

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=340, Percent_Identity=45.8823529411765, Blast_Score=311, Evalue=7e-85,
Organism=Homo sapiens, GI266456254, Length=340, Percent_Identity=45.8823529411765, Blast_Score=310, Evalue=9e-85,
Organism=Homo sapiens, GI266458393, Length=251, Percent_Identity=47.4103585657371, Blast_Score=239, Evalue=2e-63,
Organism=Homo sapiens, GI266458397, Length=249, Percent_Identity=46.9879518072289, Blast_Score=235, Evalue=4e-62,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=47.1014492753623, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=47.1014492753623, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI300863128, Length=375, Percent_Identity=26.9333333333333, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI300863124, Length=325, Percent_Identity=28.9230769230769, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI13376042, Length=322, Percent_Identity=26.3975155279503, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI300863126, Length=375, Percent_Identity=23.4666666666667, Blast_Score=89, Evalue=8e-18,
Organism=Escherichia coli, GI87082093, Length=340, Percent_Identity=28.2352941176471, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788717, Length=362, Percent_Identity=27.0718232044199, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1786222, Length=362, Percent_Identity=27.0718232044199, Blast_Score=92, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI115535051, Length=351, Percent_Identity=38.1766381766382, Blast_Score=221, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI32564160, Length=333, Percent_Identity=37.8378378378378, Blast_Score=220, Evalue=7e-58,
Organism=Drosophila melanogaster, GI24585488, Length=350, Percent_Identity=44.5714285714286, Blast_Score=289, Evalue=2e-78,
Organism=Drosophila melanogaster, GI24648431, Length=370, Percent_Identity=30.2702702702703, Blast_Score=139, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39201; Mature: 39070

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTGVKTGPLAGVKVIELGGIGPGPHAAMMLSDLGADVIRVRRPGGLAIPAEETDLFHR
CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEECCCCHHHHHHC
GKRLVNLDVKKDPEALLALVDKADVLLDPFRPGVCERIGIGPEECAKRNPRLIFARMTGW
CCEEEEECCCCCHHHHHHHHHHHHHEECCCCCCHHHHCCCCHHHHHCCCCCEEEEEECCC
GQHGPMADRAGHDINYLSLTGALGSMGYKDRPPMPPMNLVADFGGGSMLLVQGILAALYE
CCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHH
REKSGKGQVIDGAMVDGVSQLAQMQWTMYNNGLLFDEREAGLLDGGSPFYGTYETSDGKY
HHCCCCCCEECHHHHHHHHHHHHHHHEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCE
MAVGSIEPQFFAILVQGLGLDPESVPFQLDKARYPEMRKMFDDAFKTKTRDEWTEIFIGT
EEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECC
DACVSPVLTWGEAKQNEHLRDRGTIVDVDGVTQAAPAPRFSRTPSGPLGAPPKDTTELSD
HHHHHHHHHCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
IGW
CCC
>Mature Secondary Structure 
ADTGVKTGPLAGVKVIELGGIGPGPHAAMMLSDLGADVIRVRRPGGLAIPAEETDLFHR
CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEECCCCHHHHHHC
GKRLVNLDVKKDPEALLALVDKADVLLDPFRPGVCERIGIGPEECAKRNPRLIFARMTGW
CCEEEEECCCCCHHHHHHHHHHHHHEECCCCCCHHHHCCCCHHHHHCCCCCEEEEEECCC
GQHGPMADRAGHDINYLSLTGALGSMGYKDRPPMPPMNLVADFGGGSMLLVQGILAALYE
CCCCCCCCCCCCCCEEEEEECHHHCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHH
REKSGKGQVIDGAMVDGVSQLAQMQWTMYNNGLLFDEREAGLLDGGSPFYGTYETSDGKY
HHCCCCCCEECHHHHHHHHHHHHHHHEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCE
MAVGSIEPQFFAILVQGLGLDPESVPFQLDKARYPEMRKMFDDAFKTKTRDEWTEIFIGT
EEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECC
DACVSPVLTWGEAKQNEHLRDRGTIVDVDGVTQAAPAPRFSRTPSGPLGAPPKDTTELSD
HHHHHHHHHCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
IGW
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]