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The map label for this gene is yfdE [H]

Identifier: 169627923

GI number: 169627923

Start: 819628

End: 820743

Strand: Direct

Name: yfdE [H]

Synonym: MAB_0824

Alternate gene names: 169627923

Gene position: 819628-820743 (Clockwise)

Preceding gene: 169627922

Following gene: 169627924

Centisome position: 16.18

GC content: 63.53

Gene sequence:

>1116_bases
GTGACGGCGGCGGCGCTGGACGGGCTGCTGGTGGTCGACTTCAGCCGGGTGCTCGCGGGACCCTACGCCACGATGATGTT
GGGTGACTTCGGCGCCGAGGTGATAAAGATAGAACGGCCAGTACTTGGCGACGACACCCGGCAGTGGGGACCTCCTTACG
ATTCCGATGGCCAGGCAACGTATTTCAATTCGGTCAACCGGAACAAACAGTCGGTTGTGCTGGATCTCACCAGCCCCGAC
GGTCAGCACCGGGCACGCGAGTTGGCAGGCAGAGCCGACGTGGTGGTCGAAAACTTCCGGGCGGGCACCATGGAGAAGTT
CGGTCTCGGCTACCAGAGCCTGAAGCAGCTCAATCCGGGATTGATATATTGTGCGATAACAGGTTTCGGACGCGGAGCAG
GGGCAGATCTGCCGGGCTACGACCTGTTGGTGCAGGCCGTTGGTGGGTTGATGAGTGTCACCGGTCCCGACGCCGCCCAT
CCGTCCAAAGTCGGTGTCGCACTGGTCGATGTGCTGACCGCGCTACACGCGCTATCCGGGATACTCGCCGCACTCTCGTA
TCGGGACCGCACTGGGCAAGGACAACGCGTCGACACCGATCTGATGTCAGTGTTGTTGTCCTCGTTGGTCAATCAGGCAT
CGGGCTACCTCGGGGCAGGCGTAGTACCGGAGGCTCTCGGAAATCGGCACCCCAGTATCGCGCCCTACCAGACATTCGAG
ACGGCTGATCGGCCGATCGCGATCGCGGTGGGCAACGACAAACAGTTCCGGCTGCTCGTACAGGCACTGGAAATGCCGCG
GCTGGCGCGCGACGACCGATTCGCTACGAACCCGTTGCGCGTCCGCCACCGTGGCGAGCTGGTGCGGGTGTTGGAACAGC
GGCTTCGGGAGAAGAACGCCGACGACTGGTACGACACCTTGACCGCTGTGGGTGTTCCGGCGGGCCCGATCAACGACATC
GCGGAGGCGTTCCGGTTCGCCGAGCGTCTTGGGCTCGATGTGGCCGTGACGGTGCCGGGTAGCCCGGAACCGCAGGTGGC
CAATCCCATCTCGATGTCCAAGACTCCGGTTGTGTATCGCAACGGCCCGCCGCGGCTGGGACAGTCGCGCGCCTGA

Upstream 100 bases:

>100_bases
GCGCCAAGAAGAGCGGGCTAGGCCCCAAGGAACAGGGCCGGGCCGCGCGGGAGTTCTTTACCCACACCACCACCGTGTAC
CTGCGCGGTGAGGAGGCAAT

Downstream 100 bases:

>100_bases
TGAGACAGTTGTCGGGGCATGGCCGAGTACCGTCTAACCGTGCCGATCACCGTCAGGGACTTGACTCAGCGAGCTGATCT
GGGGCTGGTGCTGTCCGCTG

Product: putative L-carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MTAAALDGLLVVDFSRVLAGPYATMMLGDFGAEVIKIERPVLGDDTRQWGPPYDSDGQATYFNSVNRNKQSVVLDLTSPD
GQHRARELAGRADVVVENFRAGTMEKFGLGYQSLKQLNPGLIYCAITGFGRGAGADLPGYDLLVQAVGGLMSVTGPDAAH
PSKVGVALVDVLTALHALSGILAALSYRDRTGQGQRVDTDLMSVLLSSLVNQASGYLGAGVVPEALGNRHPSIAPYQTFE
TADRPIAIAVGNDKQFRLLVQALEMPRLARDDRFATNPLRVRHRGELVRVLEQRLREKNADDWYDTLTAVGVPAGPINDI
AEAFRFAERLGLDVAVTVPGSPEPQVANPISMSKTPVVYRNGPPRLGQSRA

Sequences:

>Translated_371_residues
MTAAALDGLLVVDFSRVLAGPYATMMLGDFGAEVIKIERPVLGDDTRQWGPPYDSDGQATYFNSVNRNKQSVVLDLTSPD
GQHRARELAGRADVVVENFRAGTMEKFGLGYQSLKQLNPGLIYCAITGFGRGAGADLPGYDLLVQAVGGLMSVTGPDAAH
PSKVGVALVDVLTALHALSGILAALSYRDRTGQGQRVDTDLMSVLLSSLVNQASGYLGAGVVPEALGNRHPSIAPYQTFE
TADRPIAIAVGNDKQFRLLVQALEMPRLARDDRFATNPLRVRHRGELVRVLEQRLREKNADDWYDTLTAVGVPAGPINDI
AEAFRFAERLGLDVAVTVPGSPEPQVANPISMSKTPVVYRNGPPRLGQSRA
>Mature_370_residues
TAAALDGLLVVDFSRVLAGPYATMMLGDFGAEVIKIERPVLGDDTRQWGPPYDSDGQATYFNSVNRNKQSVVLDLTSPDG
QHRARELAGRADVVVENFRAGTMEKFGLGYQSLKQLNPGLIYCAITGFGRGAGADLPGYDLLVQAVGGLMSVTGPDAAHP
SKVGVALVDVLTALHALSGILAALSYRDRTGQGQRVDTDLMSVLLSSLVNQASGYLGAGVVPEALGNRHPSIAPYQTFET
ADRPIAIAVGNDKQFRLLVQALEMPRLARDDRFATNPLRVRHRGELVRVLEQRLREKNADDWYDTLTAVGVPAGPINDIA
EAFRFAERLGLDVAVTVPGSPEPQVANPISMSKTPVVYRNGPPRLGQSRA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=367, Percent_Identity=40.5994550408719, Blast_Score=285, Evalue=3e-77,
Organism=Homo sapiens, GI300863124, Length=320, Percent_Identity=42.5, Blast_Score=281, Evalue=5e-76,
Organism=Homo sapiens, GI13376042, Length=320, Percent_Identity=38.125, Blast_Score=235, Evalue=5e-62,
Organism=Homo sapiens, GI300863126, Length=367, Percent_Identity=36.2397820163488, Blast_Score=233, Evalue=2e-61,
Organism=Homo sapiens, GI42794625, Length=348, Percent_Identity=29.5977011494253, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266456254, Length=348, Percent_Identity=29.5977011494253, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=33.7121212121212, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI266458397, Length=262, Percent_Identity=33.587786259542, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=39.7260273972603, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=39.7260273972603, Blast_Score=97, Evalue=3e-20,
Organism=Escherichia coli, GI87082093, Length=349, Percent_Identity=40.6876790830946, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI1788717, Length=203, Percent_Identity=38.9162561576355, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1786222, Length=339, Percent_Identity=25.3687315634218, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI32564160, Length=351, Percent_Identity=26.4957264957265, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=358, Percent_Identity=25.6983240223464, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24648431, Length=368, Percent_Identity=43.2065217391304, Blast_Score=291, Evalue=5e-79,
Organism=Drosophila melanogaster, GI24585488, Length=365, Percent_Identity=27.1232876712329, Blast_Score=102, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39815; Mature: 39684

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAALDGLLVVDFSRVLAGPYATMMLGDFGAEVIKIERPVLGDDTRQWGPPYDSDGQAT
CCCHHHCCCCEEEHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
YFNSVNRNKQSVVLDLTSPDGQHRARELAGRADVVVENFRAGTMEKFGLGYQSLKQLNPG
EECCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHCCCHHHHHHCCCC
LIYCAITGFGRGAGADLPGYDLLVQAVGGLMSVTGPDAAHPSKVGVALVDVLTALHALSG
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ILAALSYRDRTGQGQRVDTDLMSVLLSSLVNQASGYLGAGVVPEALGNRHPSIAPYQTFE
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHH
TADRPIAIAVGNDKQFRLLVQALEMPRLARDDRFATNPLRVRHRGELVRVLEQRLREKNA
CCCCCEEEEECCCHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
DDWYDTLTAVGVPAGPINDIAEAFRFAERLGLDVAVTVPGSPEPQVANPISMSKTPVVYR
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEC
NGPPRLGQSRA
CCCCCCCCCCC
>Mature Secondary Structure 
TAAALDGLLVVDFSRVLAGPYATMMLGDFGAEVIKIERPVLGDDTRQWGPPYDSDGQAT
CCHHHCCCCEEEHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
YFNSVNRNKQSVVLDLTSPDGQHRARELAGRADVVVENFRAGTMEKFGLGYQSLKQLNPG
EECCCCCCCCEEEEEECCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHCCCHHHHHHCCCC
LIYCAITGFGRGAGADLPGYDLLVQAVGGLMSVTGPDAAHPSKVGVALVDVLTALHALSG
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ILAALSYRDRTGQGQRVDTDLMSVLLSSLVNQASGYLGAGVVPEALGNRHPSIAPYQTFE
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHH
TADRPIAIAVGNDKQFRLLVQALEMPRLARDDRFATNPLRVRHRGELVRVLEQRLREKNA
CCCCCEEEEECCCHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
DDWYDTLTAVGVPAGPINDIAEAFRFAERLGLDVAVTVPGSPEPQVANPISMSKTPVVYR
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEC
NGPPRLGQSRA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]