Click here to switch to the map view.

The map label for this gene is allR [H]

Identifier: 169627912

GI number: 169627912

Start: 803711

End: 804463

Strand: Direct

Name: allR [H]

Synonym: MAB_0812

Alternate gene names: 169627912

Gene position: 803711-804463 (Clockwise)

Preceding gene: 169627911

Following gene: 169627914

Centisome position: 15.86

GC content: 64.54

Gene sequence:

>753_bases
GTGGTGGTCGAGGTCAAGAGCCTTGCGCGAGCTCTCGATGTCTTGCGCGCAGTGACGGGCTCGGACGCTCCGCTGTCGGC
CACCATGGTGGCCGATTATCTCGGCCGCGACCGGGTCCAGATCGCTCGTACTCTCCACAGCCTGGAGTCGGCCGGCTTTC
TCGAACGAGATGGCGACCGTCGGTATGCGCCCAGCCCGAGAGTCTTTGGTGTATCCGCACAGATTGCGGCGGCCCGGCTG
CGGACTTTCGGAACCGAGGCGTTGCGCCAGACTGTCGAGGCAACGGGGGAGAGCGCTTTCATCGCGGAGGTCCGCGGGGA
TAGCTCGGTCGCGGTCCTGGAGCGGTTGGTCTCTGGGGTGTCCTGGGTGGGCCGGTCATTCCCGCTGTATTGCGACGACG
CCGGTCAGGCGCTGTTGTGGGACTGTGAGCGCGACGAAGTGGAGCTTATCTTTCGGGATACCGATTTCGTCGCGTACTCG
TCGACGACACCCACTTCGACGGCCGATTTCTATCAGCGGTTGGAACGTTCGCGTGAAGCCGGATACTCCTTGGTGGACGG
GGAGTCTCAGCCTGGTGTTTATGCGATTGCCGCTCCGGTAAGGGATTTCACCGGGACGGTGCGGTGCGCTCTGCATATCC
AGGGGCCAACGCACACCCTCGCGCCACGTGCCCGGGAACTGGGCCCCACTATCAGGGAGCTGGCCGGCCAGCTTTCGGAG
CGATTGGGCTGGCGGCCCGCAGTAATGCGGTGA

Upstream 100 bases:

>100_bases
CCCGGCGGTCCCGCTCACGGCTGCGGTAGTGTTCACGTGCATCGTCATCACCCAGCGCGCGCGAACGTGAAACCGGCGGG
CGGTCGGGTACCGTCTGCCT

Downstream 100 bases:

>100_bases
CACCCTGCGCAGCTTCGGCCACCGAGGTGGCGATGGCCGTCGTCCGGCCGGAGATTCGGTGTTTGGGAACGGCAACGCTT
ACGGCCACCGTCATATCCAG

Product: putative transcriptional regulator, IclR

Products: NA

Alternate protein names: Negative regulator of allantoin and glyoxylate utilization operons [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MVVEVKSLARALDVLRAVTGSDAPLSATMVADYLGRDRVQIARTLHSLESAGFLERDGDRRYAPSPRVFGVSAQIAAARL
RTFGTEALRQTVEATGESAFIAEVRGDSSVAVLERLVSGVSWVGRSFPLYCDDAGQALLWDCERDEVELIFRDTDFVAYS
STTPTSTADFYQRLERSREAGYSLVDGESQPGVYAIAAPVRDFTGTVRCALHIQGPTHTLAPRARELGPTIRELAGQLSE
RLGWRPAVMR

Sequences:

>Translated_250_residues
MVVEVKSLARALDVLRAVTGSDAPLSATMVADYLGRDRVQIARTLHSLESAGFLERDGDRRYAPSPRVFGVSAQIAAARL
RTFGTEALRQTVEATGESAFIAEVRGDSSVAVLERLVSGVSWVGRSFPLYCDDAGQALLWDCERDEVELIFRDTDFVAYS
STTPTSTADFYQRLERSREAGYSLVDGESQPGVYAIAAPVRDFTGTVRCALHIQGPTHTLAPRARELGPTIRELAGQLSE
RLGWRPAVMR
>Mature_250_residues
MVVEVKSLARALDVLRAVTGSDAPLSATMVADYLGRDRVQIARTLHSLESAGFLERDGDRRYAPSPRVFGVSAQIAAARL
RTFGTEALRQTVEATGESAFIAEVRGDSSVAVLERLVSGVSWVGRSFPLYCDDAGQALLWDCERDEVELIFRDTDFVAYS
STTPTSTADFYQRLERSREAGYSLVDGESQPGVYAIAAPVRDFTGTVRCALHIQGPTHTLAPRARELGPTIRELAGQLSE
RLGWRPAVMR

Specific function: Negative regulator of allantoin and glyoxylate utilization operons. Binds to the gcl promoter and to the allS- allA intergenic region [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1788131, Length=248, Percent_Identity=24.5967741935484, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786715, Length=247, Percent_Identity=25.1012145748988, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082359, Length=221, Percent_Identity=24.4343891402715, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27325; Mature: 27325

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVEVKSLARALDVLRAVTGSDAPLSATMVADYLGRDRVQIARTLHSLESAGFLERDGDR
CEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
RYAPSPRVFGVSAQIAAARLRTFGTEALRQTVEATGESAFIAEVRGDSSVAVLERLVSGV
CCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH
SWVGRSFPLYCDDAGQALLWDCERDEVELIFRDTDFVAYSSTTPTSTADFYQRLERSREA
HHHCCCCCEEECCCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHC
GYSLVDGESQPGVYAIAAPVRDFTGTVRCALHIQGPTHTLAPRARELGPTIRELAGQLSE
CCEEECCCCCCCEEEEECCHHHCCCEEEEEEEECCCCCCCCCCHHHHCHHHHHHHHHHHH
RLGWRPAVMR
HCCCCCCCCC
>Mature Secondary Structure
MVVEVKSLARALDVLRAVTGSDAPLSATMVADYLGRDRVQIARTLHSLESAGFLERDGDR
CEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
RYAPSPRVFGVSAQIAAARLRTFGTEALRQTVEATGESAFIAEVRGDSSVAVLERLVSGV
CCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH
SWVGRSFPLYCDDAGQALLWDCERDEVELIFRDTDFVAYSSTTPTSTADFYQRLERSREA
HHHCCCCCEEECCCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHC
GYSLVDGESQPGVYAIAAPVRDFTGTVRCALHIQGPTHTLAPRARELGPTIRELAGQLSE
CCEEECCCCCCCEEEEECCHHHCCCEEEEEEEECCCCCCCCCCHHHHCHHHHHHHHHHHH
RLGWRPAVMR
HCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA