Click here to switch to the map view.

The map label for this gene is yfdZ [C]

Identifier: 169627787

GI number: 169627787

Start: 687175

End: 688347

Strand: Direct

Name: yfdZ [C]

Synonym: MAB_0685

Alternate gene names: 169627787

Gene position: 687175-688347 (Clockwise)

Preceding gene: 169627784

Following gene: 169627788

Centisome position: 13.56

GC content: 65.56

Gene sequence:

>1173_bases
GTGGTAGACCTCTCGCGGCGCTCGGACGTTCCGCCGTTCTATGTCATGGACGTGCTGGCGGCGGCGGCCACGCGTCAGCG
CACGCACGGCGACATGATCTCCCTGGCAGCCGGGCAGCCGTCGACGGGTGCGCCCGCGGTGGTCCTCGACGCGGTGCGGG
AGGCGCTCGGTACCCAGGTGCTCGGGTATACCGAAACGTTGGGTCTGCCGGAGCTGCGCAGCGCGATCGCCGCGTATCAC
CGCGAACGTTCCGATATTGCTGTCACCGCCGACGACGTCGTGGTCACCACGGGGTCCTCGGGAGGATTCACGCTGTTATT
TCTCGCCGCCTTCGACGTGGGGGACACCGTCGTGATGACTCGGCCAGGGTACCCGGCATATCGCAATTGCCTTGCCGCGC
TGGGCTGTCGAGTTGTGGAATTGGATTGCGGCCCCGAGACGCGATATCAGCCGACGGTGGCCATGCTGGAGGCTCTCGCG
CAGGCTGACGGCCGCGTACCCGCGGGCCTCATCGTCGCCAGCCCGGCCAACCCGACCGGCACTATCATCGATGCGGGCAA
GCTGGAGGCGATCGCGCTGTGGTGTGAGGCCAACGGCACTCTGCTGATCTCCGACGAGATTTATCACGGGCTTTCCTATG
GCGACCAAAAGACTTCCAGTGCATGGGAATTCAGCCGTGAATCGGTCGTGATGGGCTCGGTGTCCAAGTACTTCTCGATG
ACGGGCTGGCGCCTGGGCTGGATGCTAGTGCCGCGCCGGTTTCTGCGTGCCGTGGACCGGCTGTCCTCCAACTTCACGAT
CTGCCCGCCGGCCGTCTCCCAATATGGAGCGCTCGCGGCCTTCAGTCCCGAGGCTCGTGACGAGCTCGACGGGCACGTAC
GCCGTTACGCGGCCAACAGGACATTGCTCATCGACGGCCTTGCCGCCATGGGAATTACCAAGATCGCGCCACCCGACGGT
GCGTTCTATGCGTACGCCGATATCGAGCATCTGACCGATAATGCCGAACAGTGGTGTGCGGACTTGTTGGCGCGCACGGG
GGTAGCGGTCGCGCCCGGTATCGACTTCGACACTGTGCGCGGCCACCGGACCGTGCGGCTGAGCTTCGCGGGTGGTTCGG
ACGAGATTGCACAGGCATTGGCGAGAATGCGGCCCGCGCTCGGCCGGGGCTGA

Upstream 100 bases:

>100_bases
GGCGCCGGCACCGGTGGCCGCACCCAGCTTGAGTAGTGAGCGTCGGGACAGATCACGCATGCCGACCATCATGCCGGTTC
TGTCCGATACCGTCGCAGCC

Downstream 100 bases:

>100_bases
TATCAACCGCTTGCACGAGATAGCGCAAAACGCCCGTGGGGATGCTTCGCTGCTGGCAGCATGACATGGCGTGACAGTCA
GGCAGCACGCGGAGGTGTTC

Product: aspartate aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MVDLSRRSDVPPFYVMDVLAAAATRQRTHGDMISLAAGQPSTGAPAVVLDAVREALGTQVLGYTETLGLPELRSAIAAYH
RERSDIAVTADDVVVTTGSSGGFTLLFLAAFDVGDTVVMTRPGYPAYRNCLAALGCRVVELDCGPETRYQPTVAMLEALA
QADGRVPAGLIVASPANPTGTIIDAGKLEAIALWCEANGTLLISDEIYHGLSYGDQKTSSAWEFSRESVVMGSVSKYFSM
TGWRLGWMLVPRRFLRAVDRLSSNFTICPPAVSQYGALAAFSPEARDELDGHVRRYAANRTLLIDGLAAMGITKIAPPDG
AFYAYADIEHLTDNAEQWCADLLARTGVAVAPGIDFDTVRGHRTVRLSFAGGSDEIAQALARMRPALGRG

Sequences:

>Translated_390_residues
MVDLSRRSDVPPFYVMDVLAAAATRQRTHGDMISLAAGQPSTGAPAVVLDAVREALGTQVLGYTETLGLPELRSAIAAYH
RERSDIAVTADDVVVTTGSSGGFTLLFLAAFDVGDTVVMTRPGYPAYRNCLAALGCRVVELDCGPETRYQPTVAMLEALA
QADGRVPAGLIVASPANPTGTIIDAGKLEAIALWCEANGTLLISDEIYHGLSYGDQKTSSAWEFSRESVVMGSVSKYFSM
TGWRLGWMLVPRRFLRAVDRLSSNFTICPPAVSQYGALAAFSPEARDELDGHVRRYAANRTLLIDGLAAMGITKIAPPDG
AFYAYADIEHLTDNAEQWCADLLARTGVAVAPGIDFDTVRGHRTVRLSFAGGSDEIAQALARMRPALGRG
>Mature_390_residues
MVDLSRRSDVPPFYVMDVLAAAATRQRTHGDMISLAAGQPSTGAPAVVLDAVREALGTQVLGYTETLGLPELRSAIAAYH
RERSDIAVTADDVVVTTGSSGGFTLLFLAAFDVGDTVVMTRPGYPAYRNCLAALGCRVVELDCGPETRYQPTVAMLEALA
QADGRVPAGLIVASPANPTGTIIDAGKLEAIALWCEANGTLLISDEIYHGLSYGDQKTSSAWEFSRESVVMGSVSKYFSM
TGWRLGWMLVPRRFLRAVDRLSSNFTICPPAVSQYGALAAFSPEARDELDGHVRRYAANRTLLIDGLAAMGITKIAPPDG
AFYAYADIEHLTDNAEQWCADLLARTGVAVAPGIDFDTVRGHRTVRLSFAGGSDEIAQALARMRPALGRG

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=323, Percent_Identity=27.2445820433437, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI169881279, Length=323, Percent_Identity=27.2445820433437, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI4507369, Length=382, Percent_Identity=24.869109947644, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI56713256, Length=321, Percent_Identity=25.8566978193146, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI56713254, Length=324, Percent_Identity=25.9259259259259, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI169881281, Length=173, Percent_Identity=28.9017341040462, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI4885351, Length=373, Percent_Identity=26.8096514745308, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1788722, Length=387, Percent_Identity=27.6485788113695, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786816, Length=362, Percent_Identity=23.7569060773481, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788627, Length=359, Percent_Identity=22.5626740947075, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1790797, Length=371, Percent_Identity=25.3369272237197, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787710, Length=299, Percent_Identity=26.7558528428094, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567663, Length=387, Percent_Identity=24.031007751938, Blast_Score=95, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17567369, Length=314, Percent_Identity=22.9299363057325, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71994472, Length=325, Percent_Identity=25.2307692307692, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71994476, Length=322, Percent_Identity=24.8447204968944, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322401, Length=230, Percent_Identity=26.0869565217391, Blast_Score=94, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6320317, Length=356, Percent_Identity=25, Blast_Score=77, Evalue=5e-15,
Organism=Drosophila melanogaster, GI18859735, Length=262, Percent_Identity=27.4809160305344, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI45551451, Length=370, Percent_Identity=24.5945945945946, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24641770, Length=370, Percent_Identity=24.5945945945946, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24641760, Length=370, Percent_Identity=24.5945945945946, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24641768, Length=370, Percent_Identity=24.5945945945946, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24641766, Length=370, Percent_Identity=24.5945945945946, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24641764, Length=370, Percent_Identity=24.5945945945946, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28573069, Length=323, Percent_Identity=23.2198142414861, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24646114, Length=323, Percent_Identity=23.2198142414861, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28573067, Length=323, Percent_Identity=23.2198142414861, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28573065, Length=323, Percent_Identity=23.2198142414861, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 41636; Mature: 41636

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDLSRRSDVPPFYVMDVLAAAATRQRTHGDMISLAAGQPSTGAPAVVLDAVREALGTQV
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC
LGYTETLGLPELRSAIAAYHRERSDIAVTADDVVVTTGSSGGFTLLFLAAFDVGDTVVMT
CCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCEEEEEEEEECCCCEEEEE
RPGYPAYRNCLAALGCRVVELDCGPETRYQPTVAMLEALAQADGRVPAGLIVASPANPTG
CCCCHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
TIIDAGKLEAIALWCEANGTLLISDEIYHGLSYGDQKTSSAWEFSRESVVMGSVSKYFSM
CEEECCCEEEEEEEEECCCEEEEEHHHHHCCCCCCCCCCHHHHHCCCCEEHHHHHHHHHC
TGWRLGWMLVPRRFLRAVDRLSSNFTICPPAVSQYGALAAFSPEARDELDGHVRRYAANR
CCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHCCCEEECCCHHHHHHHHHHHHHHCCC
TLLIDGLAAMGITKIAPPDGAFYAYADIEHLTDNAEQWCADLLARTGVAVAPGIDFDTVR
EEEEECHHHHCEEEECCCCCCEEEEECHHHHHCCHHHHHHHHHHHCCCEEECCCCCCCCC
GHRTVRLSFAGGSDEIAQALARMRPALGRG
CCEEEEEEECCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVDLSRRSDVPPFYVMDVLAAAATRQRTHGDMISLAAGQPSTGAPAVVLDAVREALGTQV
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC
LGYTETLGLPELRSAIAAYHRERSDIAVTADDVVVTTGSSGGFTLLFLAAFDVGDTVVMT
CCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCEEEEEEEEECCCCEEEEE
RPGYPAYRNCLAALGCRVVELDCGPETRYQPTVAMLEALAQADGRVPAGLIVASPANPTG
CCCCHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
TIIDAGKLEAIALWCEANGTLLISDEIYHGLSYGDQKTSSAWEFSRESVVMGSVSKYFSM
CEEECCCEEEEEEEEECCCEEEEEHHHHHCCCCCCCCCCHHHHHCCCCEEHHHHHHHHHC
TGWRLGWMLVPRRFLRAVDRLSSNFTICPPAVSQYGALAAFSPEARDELDGHVRRYAANR
CCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHCCCEEECCCHHHHHHHHHHHHHHCCC
TLLIDGLAAMGITKIAPPDGAFYAYADIEHLTDNAEQWCADLLARTGVAVAPGIDFDTVR
EEEEECHHHHCEEEECCCCCCEEEEECHHHHHCCHHHHHHHHHHHCCCEEECCCCCCCCC
GHRTVRLSFAGGSDEIAQALARMRPALGRG
CCEEEEEEECCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]