| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
Click here to switch to the map view.
The map label for this gene is ifcA [H]
Identifier: 169627726
GI number: 169627726
Start: 622050
End: 623651
Strand: Direct
Name: ifcA [H]
Synonym: MAB_0623
Alternate gene names: 169627726
Gene position: 622050-623651 (Clockwise)
Preceding gene: 169627722
Following gene: 169627727
Centisome position: 12.28
GC content: 64.42
Gene sequence:
>1602_bases GTGCCGGGTCGTTCGGACATGCCGTCGGCCGATGTCATCATCGTCGGGTATGGGGTGGCGGGTGCGTCCGCCGCACTGGC GGCCCTGGAGCGCGGGGCGTCCGTGATCATCCTTGAGCGATTCGATGGTGGCGGAGCTTCGGCCATCTCAGGAGGCATTT ATTACGCCGGCGGCGGCACTAATATTCAGCGTGACGCCGGGGTCGAGGACACTCCGGAGCTGATGCTGGAGTACCTGCGG CTTGAGGTCGGCGATGCCGTCAAACCCGAGACGCTTCAGAAATTCGTCGACGGCAGCGTGGACACTCTGAATTGGCTGCA AGGTTACGGAGTTCCGTTCGAAGGTTCGCTGGCACCTTTCAAGACTTCGTACCCGACTGACGACTACTACCTCTACTTTT CCGGCAGTGAATCCTCCGGCATGGCGCGTGCCGCCACCCCGCCCCGCCAGCGCGGGCACCGTGCCTTTGGCCGGGGGGTG TCCGGTAAGGCGTTGTTTGCGCCCTTGGCGGATTCTGCGGAGCGTTTGGGGGCCGACGTGTGGCGGCAGACCAGGGTCAC CGGGCTGGTCGTCGAGGAGGGGCGCGTTGTCGGGGTGCGCGGGATGACGCTGAAGGACGCGCCGGCCTGGGCCCGCCGGT TGTACTCGCGTCTTACGCACTACGCGACCAAGCCGGGCATCTACTACCCGCCGATGCGAAAGACGCTCGAAGGCCCCGCA TATGCGTTGGAGCGCCGGTTCGCCAAGCCATTTGAGATCCGTGCCGACGACGGAGTGATCCTGTCGTCCGGTGGTTTTAT CGCCAATCGTGAGCTCGTACGGCGGCATGCTCCGGCCTATCTGGACGGGCTCGAGCTCGGCACCGCCGGCGACGACGGAA CCGCACTGAAGCTGGCCGAGCCGTTGGGCGCGGCAACGGGGCATCTCGATGAGATCTCGGCCTGGCGGTTTATTGTGCCG CCTGCCGCTTTCCTGGGTTCCTTGCTGGTAGATACCAAGGGGCAGAGGATGATTGACGAGTCTCGCTATGGAGCGGCCTT GGGCAAGGAGATTGTGCGTACGGCCGGCGGAGTGGGATATCTGGTTGCCGACCAGCCGTTGGTGAAGCGGGCCCGCCAAC AGTTGGGATCGCAGACGCTGTGGTTTCAGCGGATTCAGGCCGAGGCGTTCCTCAACGTGGGGCGCAAGAAGGCCGGGTCC ATCGAGGAGCTGGCAGCCAAGGCTGGTATCGACCCGGAAGGATTGGCGCGCACCGTATCCGAACACAACCGGGCCATTGC CGGTGGCACCCCCGATCCGCTGGGGAAGCCCGATGACATCAGGGTGCCCATTGAGCGGGCGCCGTTCTATCTGTTCAACG TGTCCATCAAGACCAACATGCTCAATCCGTGTCCGATGCTGACTCTTGGCGGTCTGGTCGTGGACGAGGAGACTGGTGCC GTGCAGACCACGTCGGGCGCGGCGATCCCGGGGCTCTATGCCGCCGGGCGTGCGGCGGTCGGTATCTGCTCAAATTCGTA TGTGAGCGGATTGTCCCTGGCCGACTGCGTCTTCTCCGGACGCCGGGCCGGGACCGAGACTGGAAGGCGTATAGATGCTT AG
Upstream 100 bases:
>100_bases ACCGGCGCTGGCCTGTGGTTTCATCGCCCGGACGCTGTGATGTTGCGGTGAAAACAGAAACATGTTGCTGTTTTGGCTAC ACGACGATGAGGGAGGCCCC
Downstream 100 bases:
>100_bases TTCCGAGGTACGCGATTCGATCGCGGCCGACCTGGCCGAGGCCGAGCGCACCCGAGTGGCGATCGCGCCGCCCACCGACA CGCATCCGGATTTTGACGTG
Product: hypothetical protein
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 533; Mature: 532
Protein sequence:
>533_residues MPGRSDMPSADVIIVGYGVAGASAALAALERGASVIILERFDGGGASAISGGIYYAGGGTNIQRDAGVEDTPELMLEYLR LEVGDAVKPETLQKFVDGSVDTLNWLQGYGVPFEGSLAPFKTSYPTDDYYLYFSGSESSGMARAATPPRQRGHRAFGRGV SGKALFAPLADSAERLGADVWRQTRVTGLVVEEGRVVGVRGMTLKDAPAWARRLYSRLTHYATKPGIYYPPMRKTLEGPA YALERRFAKPFEIRADDGVILSSGGFIANRELVRRHAPAYLDGLELGTAGDDGTALKLAEPLGAATGHLDEISAWRFIVP PAAFLGSLLVDTKGQRMIDESRYGAALGKEIVRTAGGVGYLVADQPLVKRARQQLGSQTLWFQRIQAEAFLNVGRKKAGS IEELAAKAGIDPEGLARTVSEHNRAIAGGTPDPLGKPDDIRVPIERAPFYLFNVSIKTNMLNPCPMLTLGGLVVDEETGA VQTTSGAAIPGLYAAGRAAVGICSNSYVSGLSLADCVFSGRRAGTETGRRIDA
Sequences:
>Translated_533_residues MPGRSDMPSADVIIVGYGVAGASAALAALERGASVIILERFDGGGASAISGGIYYAGGGTNIQRDAGVEDTPELMLEYLR LEVGDAVKPETLQKFVDGSVDTLNWLQGYGVPFEGSLAPFKTSYPTDDYYLYFSGSESSGMARAATPPRQRGHRAFGRGV SGKALFAPLADSAERLGADVWRQTRVTGLVVEEGRVVGVRGMTLKDAPAWARRLYSRLTHYATKPGIYYPPMRKTLEGPA YALERRFAKPFEIRADDGVILSSGGFIANRELVRRHAPAYLDGLELGTAGDDGTALKLAEPLGAATGHLDEISAWRFIVP PAAFLGSLLVDTKGQRMIDESRYGAALGKEIVRTAGGVGYLVADQPLVKRARQQLGSQTLWFQRIQAEAFLNVGRKKAGS IEELAAKAGIDPEGLARTVSEHNRAIAGGTPDPLGKPDDIRVPIERAPFYLFNVSIKTNMLNPCPMLTLGGLVVDEETGA VQTTSGAAIPGLYAAGRAAVGICSNSYVSGLSLADCVFSGRRAGTETGRRIDA >Mature_532_residues PGRSDMPSADVIIVGYGVAGASAALAALERGASVIILERFDGGGASAISGGIYYAGGGTNIQRDAGVEDTPELMLEYLRL EVGDAVKPETLQKFVDGSVDTLNWLQGYGVPFEGSLAPFKTSYPTDDYYLYFSGSESSGMARAATPPRQRGHRAFGRGVS GKALFAPLADSAERLGADVWRQTRVTGLVVEEGRVVGVRGMTLKDAPAWARRLYSRLTHYATKPGIYYPPMRKTLEGPAY ALERRFAKPFEIRADDGVILSSGGFIANRELVRRHAPAYLDGLELGTAGDDGTALKLAEPLGAATGHLDEISAWRFIVPP AAFLGSLLVDTKGQRMIDESRYGAALGKEIVRTAGGVGYLVADQPLVKRARQQLGSQTLWFQRIQAEAFLNVGRKKAGSI EELAAKAGIDPEGLARTVSEHNRAIAGGTPDPLGKPDDIRVPIERAPFYLFNVSIKTNMLNPCPMLTLGGLVVDEETGAV QTTSGAAIPGLYAAGRAAVGICSNSYVSGLSLADCVFSGRRAGTETGRRIDA
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI71986328, Length=295, Percent_Identity=28.8135593220339, Blast_Score=75, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 56618; Mature: 56487
Theoretical pI: Translated: 7.54; Mature: 7.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGRSDMPSADVIIVGYGVAGASAALAALERGASVIILERFDGGGASAISGGIYYAGGGT CCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHCCCEEEECCCC NIQRDAGVEDTPELMLEYLRLEVGDAVKPETLQKFVDGSVDTLNWLQGYGVPFEGSLAPF CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC KTSYPTDDYYLYFSGSESSGMARAATPPRQRGHRAFGRGVSGKALFAPLADSAERLGADV CCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHCCCCCCCEEECCHHHHHHHHHHHH WRQTRVTGLVVEEGRVVGVRGMTLKDAPAWARRLYSRLTHYATKPGIYYPPMRKTLEGPA HHHHCEEEEEEECCEEEEEECCEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHH YALERRFAKPFEIRADDGVILSSGGFIANRELVRRHAPAYLDGLELGTAGDDGTALKLAE HHHHHHCCCCEEEECCCCEEEECCCCEECHHHHHHCCCHHHCCCCCCCCCCCCCEEEECC PLGAATGHLDEISAWRFIVPPAAFLGSLLVDTKGQRMIDESRYGAALGKEIVRTAGGVGY CCCCCCCCHHHHCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE LVADQPLVKRARQQLGSQTLWFQRIQAEAFLNVGRKKAGSIEELAAKAGIDPEGLARTVS EECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHH EHNRAIAGGTPDPLGKPDDIRVPIERAPFYLFNVSIKTNMLNPCPMLTLGGLVVDEETGA HCCCEECCCCCCCCCCCCCEEEEHHHCCEEEEEEEEEECCCCCCCHHEECCEEEECCCCC VQTTSGAAIPGLYAAGRAAVGICSNSYVSGLSLADCVFSGRRAGTETGRRIDA EEECCCCCCCCHHHCCCCEEEECCCCHHCCCHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure PGRSDMPSADVIIVGYGVAGASAALAALERGASVIILERFDGGGASAISGGIYYAGGGT CCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHCCCEEEECCCC NIQRDAGVEDTPELMLEYLRLEVGDAVKPETLQKFVDGSVDTLNWLQGYGVPFEGSLAPF CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC KTSYPTDDYYLYFSGSESSGMARAATPPRQRGHRAFGRGVSGKALFAPLADSAERLGADV CCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHCCCCCCCEEECCHHHHHHHHHHHH WRQTRVTGLVVEEGRVVGVRGMTLKDAPAWARRLYSRLTHYATKPGIYYPPMRKTLEGPA HHHHCEEEEEEECCEEEEEECCEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHH YALERRFAKPFEIRADDGVILSSGGFIANRELVRRHAPAYLDGLELGTAGDDGTALKLAE HHHHHHCCCCEEEECCCCEEEECCCCEECHHHHHHCCCHHHCCCCCCCCCCCCCEEEECC PLGAATGHLDEISAWRFIVPPAAFLGSLLVDTKGQRMIDESRYGAALGKEIVRTAGGVGY CCCCCCCCHHHHCCCEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE LVADQPLVKRARQQLGSQTLWFQRIQAEAFLNVGRKKAGSIEELAAKAGIDPEGLARTVS EECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHH EHNRAIAGGTPDPLGKPDDIRVPIERAPFYLFNVSIKTNMLNPCPMLTLGGLVVDEETGA HCCCEECCCCCCCCCCCCCEEEEHHHCCEEEEEEEEEECCCCCCCHHEECCEEEECCCCC VQTTSGAAIPGLYAAGRAAVGICSNSYVSGLSLADCVFSGRRAGTETGRRIDA EEECCCCCCCCHHHCCCCEEEECCCCHHCCCHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]