| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is kshB [H]
Identifier: 169627686
GI number: 169627686
Start: 583503
End: 584555
Strand: Reverse
Name: kshB [H]
Synonym: MAB_0583c
Alternate gene names: 169627686
Gene position: 584555-583503 (Counterclockwise)
Preceding gene: 169627691
Following gene: 169627685
Centisome position: 11.54
GC content: 64.39
Gene sequence:
>1053_bases GTGACGGACGTTCCGCTCGGGAAGCACGTCCTGGAGGTTCGAATCGCCGAGGTCATCGAAGAGACCGCCGACTCCCGGTC GCTGGTCTTCGAGATTCCCGACGGGGCGGCCGATAAATTCGCGTACGCCCCCGGCCAGTACCTCACGCTGCGCATTCCTT CCGACCGCACCGGATCGGTGGCGCGCTGTTACTCGCTGTCCAGCTCTCCGCATCTGGACGATCGGTTGGCCGTCACGGTC AAACGCACCGCCGACGGCTACGGGTCCAACTGGATCTGCGACAACGCCCATGCCGGCATGCACATGCATGTGCTGGCACC GTCCGGGGTTTTCGTTCCCAAACAGCTGGACAACGACTTCCTGCTGCTGGCCGGCGGCAGCGGCGTCACCCCGATGATGG CGATCTGCAAGTCCGCGCTCTCGCAGGGCAGCGGCAAGGTCGTGCTCATCTACGCCAATCGCGATGAGCAGTCGGTGATC TTCGGGGCGGCACTGCGCGAGCTGGCGGCCAAATACCCGGATCGGCTGACCGTCATCCATTGGCTCGAATCGGTGCAGGG GCTGCCCTCGCAGCAGCAACTGGCCACGCTGACCGCACCCTTCGCCGAACATGAGGCCTTCATCTGCGGCCCCGGACCAT TCATGGATGCCTCGGAGGCCGCTCTCAAGGGCAATGGCATGCCGCACGATCGCGTGCATATCGAGGTTTTCCGCTCCCTG GAAAGCGACCCGTTCGCAGAGGTCGTGCTCGCCGAGCCCTCGGACGACGACGAACCACCGGCGACCGCGACCGTGGAACT GGACGGGGAGACCCACGAGGTCAGTTGGCCACGCAGCACCGTGCTACTCGACGTGTTACTCGCCAAGGGCCTGGACGCGC CGTTCTCCTGCCGTGAAGGCCACTGCATGACCTGCGCCTGCGTCCTCAAGGACGGCAAGGTCCGCATGCTGGTCAACGAC GCGTTGTCCCAGAACGACATCGACGATGGCTACATCCTGGCGTGTCAGGCAGTTCCGGAAACCGACGATGTCAACGTAAC CTTCGACGAGTGA
Upstream 100 bases:
>100_bases ATCTGGAACGAAGCGGCGACGGTGTTGTAGGGCCAAAGGTCAATTCTGTAACCTGTTCTAGTTCAGCCAATCGCTGACGA CGACTGACGGAGGAAATGAC
Downstream 100 bases:
>100_bases GAGACCCCTTGGCCCGCGTCATCTGCACCGTCGCCGTGATCGCCGCCGCCACCCTGACCGCTCCCGCGACGGCTCATGCG GAGGTCAAAACGGCCGACGT
Product: putative oxidoreductase
Products: NA
Alternate protein names: Rieske-type oxygenase; RO [H]
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MTDVPLGKHVLEVRIAEVIEETADSRSLVFEIPDGAADKFAYAPGQYLTLRIPSDRTGSVARCYSLSSSPHLDDRLAVTV KRTADGYGSNWICDNAHAGMHMHVLAPSGVFVPKQLDNDFLLLAGGSGVTPMMAICKSALSQGSGKVVLIYANRDEQSVI FGAALRELAAKYPDRLTVIHWLESVQGLPSQQQLATLTAPFAEHEAFICGPGPFMDASEAALKGNGMPHDRVHIEVFRSL ESDPFAEVVLAEPSDDDEPPATATVELDGETHEVSWPRSTVLLDVLLAKGLDAPFSCREGHCMTCACVLKDGKVRMLVND ALSQNDIDDGYILACQAVPETDDVNVTFDE
Sequences:
>Translated_350_residues MTDVPLGKHVLEVRIAEVIEETADSRSLVFEIPDGAADKFAYAPGQYLTLRIPSDRTGSVARCYSLSSSPHLDDRLAVTV KRTADGYGSNWICDNAHAGMHMHVLAPSGVFVPKQLDNDFLLLAGGSGVTPMMAICKSALSQGSGKVVLIYANRDEQSVI FGAALRELAAKYPDRLTVIHWLESVQGLPSQQQLATLTAPFAEHEAFICGPGPFMDASEAALKGNGMPHDRVHIEVFRSL ESDPFAEVVLAEPSDDDEPPATATVELDGETHEVSWPRSTVLLDVLLAKGLDAPFSCREGHCMTCACVLKDGKVRMLVND ALSQNDIDDGYILACQAVPETDDVNVTFDE >Mature_349_residues TDVPLGKHVLEVRIAEVIEETADSRSLVFEIPDGAADKFAYAPGQYLTLRIPSDRTGSVARCYSLSSSPHLDDRLAVTVK RTADGYGSNWICDNAHAGMHMHVLAPSGVFVPKQLDNDFLLLAGGSGVTPMMAICKSALSQGSGKVVLIYANRDEQSVIF GAALRELAAKYPDRLTVIHWLESVQGLPSQQQLATLTAPFAEHEAFICGPGPFMDASEAALKGNGMPHDRVHIEVFRSLE SDPFAEVVLAEPSDDDEPPATATVELDGETHEVSWPRSTVLLDVLLAKGLDAPFSCREGHCMTCACVLKDGKVRMLVNDA LSQNDIDDGYILACQAVPETDDVNVTFDE
Specific function: Catalyzes the opening of ring B of 1,4-androstadiene- 3,17,-dione (ADD) and 4-androstene-3,17-dione (ADD) with concomitant aromatization of ring A. The ring B is subsequently hydroxylated to yield a catechol and then subject to meta-cleavage [H]
COG id: COG1018
COG function: function code C; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding FR-type domain [H]
Homologues:
Organism=Escherichia coli, GI1787658, Length=351, Percent_Identity=34.7578347578348, Blast_Score=187, Evalue=1e-48, Organism=Escherichia coli, GI1787098, Length=346, Percent_Identity=26.5895953757225, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1788903, Length=245, Percent_Identity=27.3469387755102, Blast_Score=68, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR017927 - InterPro: IPR001041 - InterPro: IPR001709 - InterPro: IPR008333 - InterPro: IPR001433 - InterPro: IPR001221 - InterPro: IPR017938 [H]
Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 37782; Mature: 37651
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDVPLGKHVLEVRIAEVIEETADSRSLVFEIPDGAADKFAYAPGQYLTLRIPSDRTGSV CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCCCEEEEECCCCCCCCE ARCYSLSSSPHLDDRLAVTVKRTADGYGSNWICDNAHAGMHMHVLAPSGVFVPKQLDNDF EEEEECCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCEEEEEECCCCEECCCCCCCCE LLLAGGSGVTPMMAICKSALSQGSGKVVLIYANRDEQSVIFGAALRELAAKYPDRLTVIH EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH WLESVQGLPSQQQLATLTAPFAEHEAFICGPGPFMDASEAALKGNGMPHDRVHIEVFRSL HHHHHHCCCCHHHHHEEECCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHC ESDPFAEVVLAEPSDDDEPPATATVELDGETHEVSWPRSTVLLDVLLAKGLDAPFSCREG CCCCCEEEEEECCCCCCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCC HCMTCACVLKDGKVRMLVNDALSQNDIDDGYILACQAVPETDDVNVTFDE CEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECC >Mature Secondary Structure TDVPLGKHVLEVRIAEVIEETADSRSLVFEIPDGAADKFAYAPGQYLTLRIPSDRTGSV CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCCCEEEEECCCCCCCCE ARCYSLSSSPHLDDRLAVTVKRTADGYGSNWICDNAHAGMHMHVLAPSGVFVPKQLDNDF EEEEECCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCEEEEEECCCCEECCCCCCCCE LLLAGGSGVTPMMAICKSALSQGSGKVVLIYANRDEQSVIFGAALRELAAKYPDRLTVIH EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH WLESVQGLPSQQQLATLTAPFAEHEAFICGPGPFMDASEAALKGNGMPHDRVHIEVFRSL HHHHHHCCCCHHHHHEEECCCCCCCEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHC ESDPFAEVVLAEPSDDDEPPATATVELDGETHEVSWPRSTVLLDVLLAKGLDAPFSCREG CCCCCEEEEEECCCCCCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCC HCMTCACVLKDGKVRMLVNDALSQNDIDDGYILACQAVPETDDVNVTFDE CEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FAD [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA