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The map label for this gene is ydeS [H]

Identifier: 169627404

GI number: 169627404

Start: 302356

End: 302937

Strand: Reverse

Name: ydeS [H]

Synonym: MAB_0300c

Alternate gene names: 169627404

Gene position: 302937-302356 (Counterclockwise)

Preceding gene: 169627410

Following gene: 169627397

Centisome position: 5.98

GC content: 64.6

Gene sequence:

>582_bases
GTGTCGACCGAGAAGAAACCACAGATCCGCGGCGTAAATCTTGAGCGCGCCGTGCTCGCCGCGACACTCGCTCAGATAGA
AGCCGTCGGCATCGAACAAACACGGATCGCCGAGATCGCAGCCCGGGCCGGGGTTCATGAGACGTCCATCTACCGGCGCT
GGAAAACGCTGCCGAGACTGTTGGCGGACGCGCTGATCATTCACATCGACGCGGACATCCCCATCCCCGACACCGGCTCA
CTCCGCGAAGACCTGATGAGCCTGGCCCGCGGTTTGGCGCAGTTTCTGGAGACGCCCCATGGTGATGCCCTGATGCGTGG
CACCGTCCAGGTAAGCGACGATCCTGAGGTCGCCGAGGCACGCCGCGAATTCTGGAACCGGCGATTGACTGCCGTCGAGG
CGATCGTGCAGCGTGCCCTGGTCCGCGGCGAGGTGCGTCCCGGCGTCGACGCACGCACCGTCGTGCTGACCCTTGGCGGC
TACGTACACCTGTGGGCCGCACATCTAGGCCAAACAGCAGATGACCTCGCGCTGGACGAACTCGTCGACCTGATTATCGA
CGGCGTCAGCGCGGGCCGCTAA

Upstream 100 bases:

>100_bases
ACGTCCACGACCCTCACCTCCATATCGCAAGTCGACTTGCGATATGGGGACACTACGTTTGTCGCATCGACAACGCAAGT
CAGTTTGCGATAATTGGAAG

Downstream 100 bases:

>100_bases
ACACCGGTCAATCCCAACAACTCGGCGCCGTTGTGGTCCAGGATCGCCGACGCATCCTCAGCCGACAGGCCTTCTTCGAT
ATAGGTCGCGGAACTGACGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSTEKKPQIRGVNLERAVLAATLAQIEAVGIEQTRIAEIAARAGVHETSIYRRWKTLPRLLADALIIHIDADIPIPDTGS
LREDLMSLARGLAQFLETPHGDALMRGTVQVSDDPEVAEARREFWNRRLTAVEAIVQRALVRGEVRPGVDARTVVLTLGG
YVHLWAAHLGQTADDLALDELVDLIIDGVSAGR

Sequences:

>Translated_193_residues
MSTEKKPQIRGVNLERAVLAATLAQIEAVGIEQTRIAEIAARAGVHETSIYRRWKTLPRLLADALIIHIDADIPIPDTGS
LREDLMSLARGLAQFLETPHGDALMRGTVQVSDDPEVAEARREFWNRRLTAVEAIVQRALVRGEVRPGVDARTVVLTLGG
YVHLWAAHLGQTADDLALDELVDLIIDGVSAGR
>Mature_192_residues
STEKKPQIRGVNLERAVLAATLAQIEAVGIEQTRIAEIAARAGVHETSIYRRWKTLPRLLADALIIHIDADIPIPDTGSL
REDLMSLARGLAQFLETPHGDALMRGTVQVSDDPEVAEARREFWNRRLTAVEAIVQRALVRGEVRPGVDARTVVLTLGGY
VHLWAAHLGQTADDLALDELVDLIIDGVSAGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21107; Mature: 20976

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEKKPQIRGVNLERAVLAATLAQIEAVGIEQTRIAEIAARAGVHETSIYRRWKTLPRL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LADALIIHIDADIPIPDTGSLREDLMSLARGLAQFLETPHGDALMRGTVQVSDDPEVAEA
HHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECEEEECCCHHHHHH
RREFWNRRLTAVEAIVQRALVRGEVRPGVDARTVVLTLGGYVHLWAAHLGQTADDLALDE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCCHHHHHHHHHCCCHHHHHHHH
LVDLIIDGVSAGR
HHHHHHHHHCCCC
>Mature Secondary Structure 
STEKKPQIRGVNLERAVLAATLAQIEAVGIEQTRIAEIAARAGVHETSIYRRWKTLPRL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LADALIIHIDADIPIPDTGSLREDLMSLARGLAQFLETPHGDALMRGTVQVSDDPEVAEA
HHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECEEEECCCHHHHHH
RREFWNRRLTAVEAIVQRALVRGEVRPGVDARTVVLTLGGYVHLWAAHLGQTADDLALDE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEECCCHHHHHHHHHCCCHHHHHHHH
LVDLIIDGVSAGR
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]