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The map label for this gene is rfbD [H]

Identifier: 169627306

GI number: 169627306

Start: 211043

End: 211930

Strand: Reverse

Name: rfbD [H]

Synonym: MAB_0201c

Alternate gene names: 169627306

Gene position: 211930-211043 (Counterclockwise)

Preceding gene: 169627307

Following gene: 169627305

Centisome position: 4.18

GC content: 58.67

Gene sequence:

>888_bases
GTGAGCAGTTCGGCCGGCCTGACAAGCCAGCGCCCAGGGTCGAAGGAGAATGACATGGCGAACGAACTGATCGAACTATC
ATCGGACTCCCGTACCTTCAAGCGCGCATGGCGTGACCTGTCAGAGGGTTTCGAGCATCGGCAGCTCTGGTTACAGCTCG
GCTGGCAGGACATCAAGCAGCGCTATCGGCGTTCGGTGCTGGGACCGTTCTGGATCACCATCGCCACCGGATCGACAGCG
CTGGCCATGGGCATCCTGTACTCGCAACTGTTCAAGCTGCCGCTGGCTGAACATCTGCCTTACGTGACAATCGGTTTGAT
CGTCTGGAACCTCTTCAACGCGGCGATCCTCGAGGGTTCGGACGTCTTCGTCGCGAATGAGGGCCTGATCAAACAGCTCC
CGACTCCTCTGAGTGTGCACGTCTATCGGCTGGTCTGGCGACAGCTGCTGCTGTTCGCGCACAACATCATCATTTTCCTG
ATCGTGGTCGCGGTATACACGCCGCATTGGCATTTCACCGATCTCAGTTTCATCCCCGCGCTGGTGTTGATCACGCTGAA
TTGCCTGTGGGTTTCCCTGGTTTTCGGCGTGCTGGCCACCCGCTATCGGGATATCTCACCGCTGTTGGGCAGCCTGGTGC
AACTGCTGTTCTTCATGACGCCGATCATCTGGAACGAGAACATGCTCAACCAGCGGGTGGGCAAGTTGGCCACCGTGGTG
CAGCTCAACCCGTTTGTGCACTTCCTTGCCATCATCCGTGACCCGCTGCTGGGGCTTGATCAGCAGCTGCACCACTGGAT
CATCGCGCTGTCGATCACGGTGGTCGGTTGGATCGTTGCGATCGTGGTGATGCGCCAGTATCGGGCCAGGGTCCCGTATT
GGGTTTAG

Upstream 100 bases:

>100_bases
CTGGCGCAGGAATGGGTGCGTTTCGGATGGTACTTCTTGATCACCCGGCGTGACCCTGCCGGACTGCGTGAGTGGATCGC
GCTGCGGCGCTTGGGCCGGC

Downstream 100 bases:

>100_bases
TCATGCCAGCGAGATCCGACCGAGGGTACGTATGGCCGCTGCTGTCGGCTGCCGCTGCCCTCATCGTGTTCGCACTGCTC
TGGCTGGGCTATGCCCAACA

Product: O-antigen/lipopolysaccharide transport integral membrane protein ABC transporter RfbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MSSSAGLTSQRPGSKENDMANELIELSSDSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQRYRRSVLGPFWITIATGSTA
LAMGILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGSDVFVANEGLIKQLPTPLSVHVYRLVWRQLLLFAHNIIIFL
IVVAVYTPHWHFTDLSFIPALVLITLNCLWVSLVFGVLATRYRDISPLLGSLVQLLFFMTPIIWNENMLNQRVGKLATVV
QLNPFVHFLAIIRDPLLGLDQQLHHWIIALSITVVGWIVAIVVMRQYRARVPYWV

Sequences:

>Translated_295_residues
MSSSAGLTSQRPGSKENDMANELIELSSDSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQRYRRSVLGPFWITIATGSTA
LAMGILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGSDVFVANEGLIKQLPTPLSVHVYRLVWRQLLLFAHNIIIFL
IVVAVYTPHWHFTDLSFIPALVLITLNCLWVSLVFGVLATRYRDISPLLGSLVQLLFFMTPIIWNENMLNQRVGKLATVV
QLNPFVHFLAIIRDPLLGLDQQLHHWIIALSITVVGWIVAIVVMRQYRARVPYWV
>Mature_294_residues
SSSAGLTSQRPGSKENDMANELIELSSDSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQRYRRSVLGPFWITIATGSTAL
AMGILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGSDVFVANEGLIKQLPTPLSVHVYRLVWRQLLLFAHNIIIFLI
VVAVYTPHWHFTDLSFIPALVLITLNCLWVSLVFGVLATRYRDISPLLGSLVQLLFFMTPIIWNENMLNQRVGKLATVVQ
LNPFVHFLAIIRDPLLGLDQQLHHWIIALSITVVGWIVAIVVMRQYRARVPYWV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 33811; Mature: 33680

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSAGLTSQRPGSKENDMANELIELSSDSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQ
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
RYRRSVLGPFWITIATGSTALAMGILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGS
HHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCC
DVFVANEGLIKQLPTPLSVHVYRLVWRQLLLFAHNIIIFLIVVAVYTPHWHFTDLSFIPA
CEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LVLITLNCLWVSLVFGVLATRYRDISPLLGSLVQLLFFMTPIIWNENMLNQRVGKLATVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
QLNPFVHFLAIIRDPLLGLDQQLHHWIIALSITVVGWIVAIVVMRQYRARVPYWV
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSSAGLTSQRPGSKENDMANELIELSSDSRTFKRAWRDLSEGFEHRQLWLQLGWQDIKQ
CCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
RYRRSVLGPFWITIATGSTALAMGILYSQLFKLPLAEHLPYVTIGLIVWNLFNAAILEGS
HHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCC
DVFVANEGLIKQLPTPLSVHVYRLVWRQLLLFAHNIIIFLIVVAVYTPHWHFTDLSFIPA
CEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LVLITLNCLWVSLVFGVLATRYRDISPLLGSLVQLLFFMTPIIWNENMLNQRVGKLATVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
QLNPFVHFLAIIRDPLLGLDQQLHHWIIALSITVVGWIVAIVVMRQYRARVPYWV
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]