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The map label for this gene is slyA [C]

Identifier: 169627188

GI number: 169627188

Start: 79890

End: 80324

Strand: Direct

Name: slyA [C]

Synonym: MAB_0083

Alternate gene names: 169627188

Gene position: 79890-80324 (Clockwise)

Preceding gene: 169627186

Following gene: 169627189

Centisome position: 1.58

GC content: 63.68

Gene sequence:

>435_bases
ATGGATGAGCAGGAATGGCAGCCGCTCGGCGCGTTGATGTATCGCGTGTCTGCGGCTTTGCGATCTGAGATCACGGCGGC
GTTGGCATCGCTGAATCTGCCATTCCCCCAGTACGTCTGTATGCGGGTGCTATCGAAGAACCCGGGTTGGTCCAACGCCG
ATCTGGCCCGTGCGATCGATGTGACTCCGCAGTCGATGAATACCGTACTGCAGGCTCTGCAGGACGCCGGGTTGGTATCG
CGGCCGGACACCGTGGACACCGGTCGCGCCCGGCCGGCGCAGTTGAGCCGGTCCGGCACCGCCCTACTCAAACAGGCAGA
TGTGTTGGCCCGGGAGGCCGAGGAACGCCTGTTGTCGGGTATCTCGGCGCGGCAACGCAGCGACTTCTTCCAAACGCTGC
GCGATATCGCCGGCGAGGATGCTCCCTGTCCATAG

Upstream 100 bases:

>100_bases
CTGATTGCTGCCATCGATCAAGGGTAGCAACGGCCGATAGCGGGTACGGTGCTCCCGGGCCGCTCAGCGGGACGACAGTA
GCTGTGTCAACATCACTGAT

Downstream 100 bases:

>100_bases
GGTGCGTATCGCACGGCAGGGCCCGGTACTTTCGAGGTCGTGAGGTGGCTCGCCGCGAGTGCGTTGATAGGAGTTTCGGC
CGTACTTGTCGGGTGCTCGC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MDEQEWQPLGALMYRVSAALRSEITAALASLNLPFPQYVCMRVLSKNPGWSNADLARAIDVTPQSMNTVLQALQDAGLVS
RPDTVDTGRARPAQLSRSGTALLKQADVLAREAEERLLSGISARQRSDFFQTLRDIAGEDAPCP

Sequences:

>Translated_144_residues
MDEQEWQPLGALMYRVSAALRSEITAALASLNLPFPQYVCMRVLSKNPGWSNADLARAIDVTPQSMNTVLQALQDAGLVS
RPDTVDTGRARPAQLSRSGTALLKQADVLAREAEERLLSGISARQRSDFFQTLRDIAGEDAPCP
>Mature_144_residues
MDEQEWQPLGALMYRVSAALRSEITAALASLNLPFPQYVCMRVLSKNPGWSNADLARAIDVTPQSMNTVLQALQDAGLVS
RPDTVDTGRARPAQLSRSGTALLKQADVLAREAEERLLSGISARQRSDFFQTLRDIAGEDAPCP

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 15699; Mature: 15699

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQEWQPLGALMYRVSAALRSEITAALASLNLPFPQYVCMRVLSKNPGWSNADLARAID
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHC
VTPQSMNTVLQALQDAGLVSRPDTVDTGRARPAQLSRSGTALLKQADVLAREAEERLLSG
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISARQRSDFFQTLRDIAGEDAPCP
HHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDEQEWQPLGALMYRVSAALRSEITAALASLNLPFPQYVCMRVLSKNPGWSNADLARAID
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHC
VTPQSMNTVLQALQDAGLVSRPDTVDTGRARPAQLSRSGTALLKQADVLAREAEERLLSG
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISARQRSDFFQTLRDIAGEDAPCP
HHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]