Click here to switch to the map view.

The map label for this gene is int [H]

Identifier: 169834527

GI number: 169834527

Start: 2050717

End: 2051850

Strand: Direct

Name: int [H]

Synonym: SPH_2234

Alternate gene names: 169834527

Gene position: 2050717-2051850 (Clockwise)

Preceding gene: 169832681

Following gene: 169832462

Centisome position: 91.32

GC content: 32.89

Gene sequence:

>1134_bases
ATGGCAATTAGAAAAGGTAAAGACGGTAATTGGATAGTTGATATTAGCAACGGTTTTGACCCAATAACACTAAAGCAACG
TAGAATTGTCAGAAAGGGCTATAAGACGAAAAAAGAAGCTATTGAAGCAGAACACTACTTACGAAGTGTAGAGTTAAAAG
AACGCTTCTATGGGGCTAAAATAACTATCCCCATACTATATGAACTACTAAAGGAAGAAGATAGTATAAATCATCGAAAA
GCAAGCTATATCAATACACAAGATAATAATTACAACAAACACATCAAAGATTATTTTTCTATGGTAGATAATGTCGGAAA
ACTAACCTATGAAGACATCTACCAATTTAGAGAACATCTTAGGCAAAAAGTAGCTAAAAATTCTGATAAACCTTTAAGCA
CAAACACTATCAACAAAATCATGATTTTACTCAAAAAGATTTTTGATGTTGGTTTGCGAAAAGGCTATTACACCTCCAAT
CCAGCAAATTTGATAAAAAAGTTGCCAATCGAAAAAACAAAAATGCAGTTTTGGACAGTCAAAGAATTTCAACATTTTTT
AACCTTGTTTGAAACTGAAGAATATAATATCAAGTTACTCTTTACTGTTCTATTCTTTACAGGACTACGACTTGGGGAAG
CATTAGCACTAACATGGCAAGACATTGATTTTACAAGCAATACAATTCACATTACAAAATCAGTTTATGTAAACAAAGGA
ATAAGTCATGTTAGCACAACAAAGACTAAAGCTGGAACAAGAAGAATTATCATTAATAAGAAATTGAGCCATGAACTACA
ACAATGGCAACAGAAACAAAAACACCTATTAGAACAATTTACTAGTGATAGCATGACCCTACAAGTGTTTCAAGGCTCAC
CTATTACAATTACAAAAAATGCAGTTGAAAATCAATATAAGAAAATACTTGAACGTGATAGCACACTAAAAAAGATACGC
ATACACGATTTTAGGCACTCACACGCTTCCCTGCTGATTAACCAAGGGGAAGATTATCTAGTTGTAAAAGAGCGACTAGG
ACATGCTTCTATAACAACCACGATTGATACCTACTCTCACTTGTACCCAAGTAAGCAAAAGGATTTAGCTGATAAACTAG
ATGAATTACTATAA

Upstream 100 bases:

>100_bases
TACAGTCTATCAGAATAAACGAATTGGTACTATACCTGCTACTATTGTAAGCGAATTACTCGGTTTTGATGTTCAAAACA
GTACCCTCAAGGAGTAAAAT

Downstream 100 bases:

>100_bases
AGTAATTGAGTTTTATAAATGGAAAGTTTATAATTAAATCATGGATACATCACAAGCAATAAAAGCACATGAAGTAGCTA
AAAAAGCACACTTTGGACAA

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MAIRKGKDGNWIVDISNGFDPITLKQRRIVRKGYKTKKEAIEAEHYLRSVELKERFYGAKITIPILYELLKEEDSINHRK
ASYINTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYTSN
PANLIKKLPIEKTKMQFWTVKEFQHFLTLFETEEYNIKLLFTVLFFTGLRLGEALALTWQDIDFTSNTIHITKSVYVNKG
ISHVSTTKTKAGTRRIIINKKLSHELQQWQQKQKHLLEQFTSDSMTLQVFQGSPITITKNAVENQYKKILERDSTLKKIR
IHDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKDLADKLDELL

Sequences:

>Translated_377_residues
MAIRKGKDGNWIVDISNGFDPITLKQRRIVRKGYKTKKEAIEAEHYLRSVELKERFYGAKITIPILYELLKEEDSINHRK
ASYINTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYTSN
PANLIKKLPIEKTKMQFWTVKEFQHFLTLFETEEYNIKLLFTVLFFTGLRLGEALALTWQDIDFTSNTIHITKSVYVNKG
ISHVSTTKTKAGTRRIIINKKLSHELQQWQQKQKHLLEQFTSDSMTLQVFQGSPITITKNAVENQYKKILERDSTLKKIR
IHDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKDLADKLDELL
>Mature_376_residues
AIRKGKDGNWIVDISNGFDPITLKQRRIVRKGYKTKKEAIEAEHYLRSVELKERFYGAKITIPILYELLKEEDSINHRKA
SYINTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYTSNP
ANLIKKLPIEKTKMQFWTVKEFQHFLTLFETEEYNIKLLFTVLFFTGLRLGEALALTWQDIDFTSNTIHITKSVYVNKGI
SHVSTTKTKAGTRRIIINKKLSHELQQWQQKQKHLLEQFTSDSMTLQVFQGSPITITKNAVENQYKKILERDSTLKKIRI
HDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSHLYPSKQKDLADKLDELL

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44164; Mature: 44032

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRKGKDGNWIVDISNGFDPITLKQRRIVRKGYKTKKEAIEAEHYLRSVELKERFYGAK
CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCE
ITIPILYELLKEEDSINHRKASYINTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHL
EHHHHHHHHHHCCCCCCCHHHCEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYTSNPANLIKKLPIEKTKMQFWTV
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHH
KEFQHFLTLFETEEYNIKLLFTVLFFTGLRLGEALALTWQDIDFTSNTIHITKSVYVNKG
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEEEEECCC
ISHVSTTKTKAGTRRIIINKKLSHELQQWQQKQKHLLEQFTSDSMTLQVFQGSPITITKN
CCHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHH
AVENQYKKILERDSTLKKIRIHDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH
HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHEEEECCCCEEEEHHHCCCCEEEEHHHHHHH
LYPSKQKDLADKLDELL
HCCCHHHHHHHHHHHHC
>Mature Secondary Structure 
AIRKGKDGNWIVDISNGFDPITLKQRRIVRKGYKTKKEAIEAEHYLRSVELKERFYGAK
CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCE
ITIPILYELLKEEDSINHRKASYINTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHL
EHHHHHHHHHHCCCCCCCHHHCEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
RQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYTSNPANLIKKLPIEKTKMQFWTV
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHH
KEFQHFLTLFETEEYNIKLLFTVLFFTGLRLGEALALTWQDIDFTSNTIHITKSVYVNKG
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEEEEEECCC
ISHVSTTKTKAGTRRIIINKKLSHELQQWQQKQKHLLEQFTSDSMTLQVFQGSPITITKN
CCHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHH
AVENQYKKILERDSTLKKIRIHDFRHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH
HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHEEEECCCCEEEEHHHCCCCEEEEHHHHHHH
LYPSKQKDLADKLDELL
HCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]