Click here to switch to the map view.

The map label for this gene is hsdS [C]

Identifier: 169834523

GI number: 169834523

Start: 567491

End: 568096

Strand: Direct

Name: hsdS [C]

Synonym: SPH_0617

Alternate gene names: 169834523

Gene position: 567491-568096 (Clockwise)

Preceding gene: 169834025

Following gene: 169832695

Centisome position: 25.27

GC content: 30.53

Gene sequence:

>606_bases
GTGGTCAAACTGACTACCTGCTATTTTTGTGATTATGGCTCTTATTATGGGAATATACCTATGAATTGGGGTGTTATAAA
AATAAAAGATATTTTTTCAATAAATACAGGTCTTTCTTACAAGAAGGGCGATTTAAGCATTAATAATAAAGGTGTTAGAA
TTATACGTGGTGGTAATATTAAGCCTTTAGAATTTTCTCTGTTGGATAACGATTACTACATTGATACACAATTCATCTCC
TCTGAGCAAGTTTATTTAAAACATAATCAGCTAATAACACCTGTATCAACCTCTTTAGAACATATTGGAAAGTTTGCAAG
AATCGATAAAGACTATGATGGTGTTGTGGCTGGTGGATTTATTTTCCAATTAACACCATTCGAAAGTTCAGAGATTATTT
CAAAATTTCTATTATTTAACTTGTCCTCTCCGTTATTTTATAAACAATTGAAAGCAATAACTAAACTATCAGGTCAAGCT
TTATATAATATTCCTAAAACTACACTAAGCGAGCTATTAATTCCGTTAGCTCCTTTTGAGGAACAGGAACTTATTACTCA
AAAAGTTGAGAAACTTTTTGAAAAAGTAAATCAACTTTGGAAATGA

Upstream 100 bases:

>100_bases
GGACACGAAAGTATAGAAACTACTCGAATTTATCTAAGGAAAACAGCTACTGAACAACAAAATATTGTAGATAAAATTGT
TAATTGGTAAAAAATAACAG

Downstream 100 bases:

>100_bases
TTCTTTTCATCTCTTCATGATTAGAAATAGGGATTAATAATTCGGAGATACTGGTACTATTTAATGTTTTCCCTTTGATA
GCATCTTTTGAATCACCTAA

Product: type I restriction modification DNA specificity domain-containing protein

Products: NA

Alternate protein names: Type I Restriction- System; Type I Restriction EcoKI Specificity Protein

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MVKLTTCYFCDYGSYYGNIPMNWGVIKIKDIFSINTGLSYKKGDLSINNKGVRIIRGGNIKPLEFSLLDNDYYIDTQFIS
SEQVYLKHNQLITPVSTSLEHIGKFARIDKDYDGVVAGGFIFQLTPFESSEIISKFLLFNLSSPLFYKQLKAITKLSGQA
LYNIPKTTLSELLIPLAPFEEQELITQKVEKLFEKVNQLWK

Sequences:

>Translated_201_residues
MVKLTTCYFCDYGSYYGNIPMNWGVIKIKDIFSINTGLSYKKGDLSINNKGVRIIRGGNIKPLEFSLLDNDYYIDTQFIS
SEQVYLKHNQLITPVSTSLEHIGKFARIDKDYDGVVAGGFIFQLTPFESSEIISKFLLFNLSSPLFYKQLKAITKLSGQA
LYNIPKTTLSELLIPLAPFEEQELITQKVEKLFEKVNQLWK
>Mature_201_residues
MVKLTTCYFCDYGSYYGNIPMNWGVIKIKDIFSINTGLSYKKGDLSINNKGVRIIRGGNIKPLEFSLLDNDYYIDTQFIS
SEQVYLKHNQLITPVSTSLEHIGKFARIDKDYDGVVAGGFIFQLTPFESSEIISKFLLFNLSSPLFYKQLKAITKLSGQA
LYNIPKTTLSELLIPLAPFEEQELITQKVEKLFEKVNQLWK

Specific function: The M And S Subunits Together Form A Methyltransferase (Mtase) That Methylates Two Adenine Residues In Complementary Strands Of A Bipartite DNA Recognition Sequence. In The Presence Of The R Subunit The Complex Can Also Act As An Endonuclease, Binding To

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22974; Mature: 22974

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKLTTCYFCDYGSYYGNIPMNWGVIKIKDIFSINTGLSYKKGDLSINNKGVRIIRGGNI
CEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEECCCCEEEEECCCC
KPLEFSLLDNDYYIDTQFISSEQVYLKHNQLITPVSTSLEHIGKFARIDKDYDGVVAGGF
CEEEEEEECCCEEEEEEEECCCEEEEECCCEECHHHHHHHHHHHHHHCCCCCCCEEECCE
IFQLTPFESSEIISKFLLFNLSSPLFYKQLKAITKLSGQALYNIPKTTLSELLIPLAPFE
EEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCC
EQELITQKVEKLFEKVNQLWK
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVKLTTCYFCDYGSYYGNIPMNWGVIKIKDIFSINTGLSYKKGDLSINNKGVRIIRGGNI
CEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEECCCCEEEEECCCC
KPLEFSLLDNDYYIDTQFISSEQVYLKHNQLITPVSTSLEHIGKFARIDKDYDGVVAGGF
CEEEEEEECCCEEEEEEEECCCEEEEECCCEECHHHHHHHHHHHHHHCCCCCCCEEECCE
IFQLTPFESSEIISKFLLFNLSSPLFYKQLKAITKLSGQALYNIPKTTLSELLIPLAPFE
EEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCC
EQELITQKVEKLFEKVNQLWK
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA