Click here to switch to the map view.

The map label for this gene is rplW [H]

Identifier: 169834371

GI number: 169834371

Start: 285078

End: 285374

Strand: Direct

Name: rplW [H]

Synonym: SPH_0325

Alternate gene names: 169834371

Gene position: 285078-285374 (Clockwise)

Preceding gene: 169833141

Following gene: 169833790

Centisome position: 12.69

GC content: 36.36

Gene sequence:

>297_bases
ATGAATTTGTATGATGTTATCAAAAAACCTGTCATCACTGAAAGCTCAATGGCTCAACTTGAAGCAGGAAAATATGTATT
TGAAGTTGACACTCGTGCACACAAACTTTTGATCAAGCAAGCTGTTGAAGCTGCTTTCGAAGGTGTTAAAGTTGCCAATG
TTAACACAATCAACGTAAAACCAAAAGCTAAACGTGTTGGACGTTACACTGGTTTTACTAACAAAACTAAAAAAGCTATC
ATCACACTTACAGCTGATTCTAAAGCAATCGAGTTGTTTGCTGCTGAAGCTGAATAA

Upstream 100 bases:

>100_bases
TTGCAACTGCTACAACTGCAAGTGTTCTTGACATCGCAAATAGCGACAAACTTCTTGTCACACAAGCAGCTATCTCTAAA
ATCGAGGAGGTTCTTGCATA

Downstream 100 bases:

>100_bases
TCTAAGGAGGAAATATCGTGGGAATTCGTGTTTATAAACCAACAACAAACGGTCGCCGTAATATGACTTCTTTGGATTTC
GCTGAAATCACAACAAGCAC

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MNLYDVIKKPVITESSMAQLEAGKYVFEVDTRAHKLLIKQAVEAAFEGVKVANVNTINVKPKAKRVGRYTGFTNKTKKAI
ITLTADSKAIELFAAEAE

Sequences:

>Translated_98_residues
MNLYDVIKKPVITESSMAQLEAGKYVFEVDTRAHKLLIKQAVEAAFEGVKVANVNTINVKPKAKRVGRYTGFTNKTKKAI
ITLTADSKAIELFAAEAE
>Mature_98_residues
MNLYDVIKKPVITESSMAQLEAGKYVFEVDTRAHKLLIKQAVEAAFEGVKVANVNTINVKPKAKRVGRYTGFTNKTKKAI
ITLTADSKAIELFAAEAE

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome [H]

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025 [H]

Pfam domain/function: PF00276 Ribosomal_L23 [H]

EC number: NA

Molecular weight: Translated: 10786; Mature: 10786

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLYDVIKKPVITESSMAQLEAGKYVFEVDTRAHKLLIKQAVEAAFEGVKVANVNTINVK
CCHHHHHCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCEEECCCEEEECC
PKAKRVGRYTGFTNKTKKAIITLTADSKAIELFAAEAE
CCHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCC
>Mature Secondary Structure
MNLYDVIKKPVITESSMAQLEAGKYVFEVDTRAHKLLIKQAVEAAFEGVKVANVNTINVK
CCHHHHHCCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCEEECCCEEEECC
PKAKRVGRYTGFTNKTKKAIITLTADSKAIELFAAEAE
CCHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA