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The map label for this gene is yybJ [H]

Identifier: 169834100

GI number: 169834100

Start: 976385

End: 976972

Strand: Direct

Name: yybJ [H]

Synonym: SPH_1057

Alternate gene names: 169834100

Gene position: 976385-976972 (Clockwise)

Preceding gene: 169832571

Following gene: 169832535

Centisome position: 43.48

GC content: 41.67

Gene sequence:

>588_bases
ATGTTAAATCTTACTCATGTTACCTTAAAAACGCGACAAGTCATCTTGCAAGATGCGGATTTTACCTTTAAAAAGGGTAG
GATTTATGGCCTTCTTGCTATCAATGGCTCGGGAAAGACGACACTATTCCGAGCTATGAGCAAGTTGCTTCCCCTTAGTA
GTGGACACATCGCAGTTCCTCCTTCTTTGTTTTATTATGAGAGCGTTGAATGGCTGGATGGAAACTTAAGTGGGATGGAC
TACCTTCGTCTCATAAAAAACATCTGGAAGTCAGACCTAAACTTGAGAGATGAAATCGCCTACTGGGAAATGGCTGACTA
TATCAGTCTTCCCATCCGCAAGTATTCCTTAGGGATGAAGCAACGCTTGGTGATTGCTATGTATTTTCTCAGTCAGGCCA
AATGCTGGCTCATGGATGAGATTACAAATGGCTTAGACGAGTATTATCGACAGAAGTTTTTTGATAGGCTAGCACAAATC
GATAGACAAGAACAGCTGGTTCTTTTAAGTTCCCACTATAAGGAAGAGTTGGTTGATATCTGCGATAGAGTAGTAACCAT
TCATCAGGGGCAGATAGAAGAGGTTTAG

Upstream 100 bases:

>100_bases
TATAAAGTTGGCGGAGGCTGGAACTACGCTCGTTATGAGGTCATAAACTACTATACTGGAGGTTATTAATCCTTAAAGAG
TGAGAAAAGGAGGGCTGGAT

Downstream 100 bases:

>100_bases
TTTATGAAAGATGTTAGTCTATTTTTATTGAAAAAAGTTTTCAAAAGTCGTTTAAACTGGATTATCTTACTTTTATTTGC
ATCTGTACTCGGTGTTACCT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MLNLTHVTLKTRQVILQDADFTFKKGRIYGLLAINGSGKTTLFRAMSKLLPLSSGHIAVPPSLFYYESVEWLDGNLSGMD
YLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMKQRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQI
DRQEQLVLLSSHYKEELVDICDRVVTIHQGQIEEV

Sequences:

>Translated_195_residues
MLNLTHVTLKTRQVILQDADFTFKKGRIYGLLAINGSGKTTLFRAMSKLLPLSSGHIAVPPSLFYYESVEWLDGNLSGMD
YLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMKQRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQI
DRQEQLVLLSSHYKEELVDICDRVVTIHQGQIEEV
>Mature_195_residues
MLNLTHVTLKTRQVILQDADFTFKKGRIYGLLAINGSGKTTLFRAMSKLLPLSSGHIAVPPSLFYYESVEWLDGNLSGMD
YLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMKQRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQI
DRQEQLVLLSSHYKEELVDICDRVVTIHQGQIEEV

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27262624, Length=206, Percent_Identity=23.7864077669903, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI27262626, Length=206, Percent_Identity=23.7864077669903, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI105990541, Length=184, Percent_Identity=25.5434782608696, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI27477115, Length=197, Percent_Identity=24.3654822335025, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI27436953, Length=195, Percent_Identity=24.1025641025641, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI6005701, Length=201, Percent_Identity=24.8756218905473, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI153792144, Length=205, Percent_Identity=23.4146341463415, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI31657092, Length=201, Percent_Identity=23.8805970149254, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI66529005, Length=201, Percent_Identity=26.3681592039801, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1790190, Length=206, Percent_Identity=21.3592233009709, Blast_Score=64, Evalue=9e-12,
Organism=Drosophila melanogaster, GI221500365, Length=181, Percent_Identity=26.5193370165746, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007184, Length=181, Percent_Identity=26.5193370165746, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28574150, Length=204, Percent_Identity=22.5490196078431, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007328, Length=204, Percent_Identity=22.5490196078431, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI85725262, Length=189, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 22797; Mature: 22797

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLTHVTLKTRQVILQDADFTFKKGRIYGLLAINGSGKTTLFRAMSKLLPLSSGHIAVP
CCCEEEEHHHHHHHHHCCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEECC
PSLFYYESVEWLDGNLSGMDYLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMK
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCHH
QRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQIDRQEQLVLLSSHYKEELVDI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CDRVVTIHQGQIEEV
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MLNLTHVTLKTRQVILQDADFTFKKGRIYGLLAINGSGKTTLFRAMSKLLPLSSGHIAVP
CCCEEEEHHHHHHHHHCCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEECC
PSLFYYESVEWLDGNLSGMDYLRLIKNIWKSDLNLRDEIAYWEMADYISLPIRKYSLGMK
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCHH
QRLVIAMYFLSQAKCWLMDEITNGLDEYYRQKFFDRLAQIDRQEQLVLLSSHYKEELVDI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
CDRVVTIHQGQIEEV
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938973; 7584024; 9384377 [H]