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The map label for this gene is ydcI [H]

Identifier: 169833704

GI number: 169833704

Start: 937532

End: 939904

Strand: Direct

Name: ydcI [H]

Synonym: SPH_1014

Alternate gene names: 169833704

Gene position: 937532-939904 (Clockwise)

Preceding gene: 169833497

Following gene: 169832706

Centisome position: 41.75

GC content: 42.94

Gene sequence:

>2373_bases
TTGATACACTTCGAAAATCTCTTCAAACCACGTCAGCTTCGCCTTACCGTAGTACGGTTACTGACTTCGTCAGTTCTATC
CACAACCTCAAAACAGTGTTTTGAGCTGACTTCGTCAGTCTTATCCACAACCTCAAAACAGTATTTTGAGCAGCCTGCGG
CTAGCTTCCTAGTTTGCTTTTTGATTTTCATTGAGTATGAAAAGGATTGGAGAAAGCCTTCCAGCTTGTGGTATAATAGA
TTTATGGATAAAAAATATGAAAAAATCTCTCAGGATTTGGGAGTGACGTTAAAGCAAATTGATACCGTTCTAAGTTTGAC
AGCTGAAGGGGCGACTATTCCCTTTATCGCGCGTTATCGCAAGGACATGACTGGTAGTCTGGATGAGGTGGCGATTAAGG
CTATTATTGATTTGGATAAAAGTCTGACAAATCTCAATGACCGTAAGGAAGCTGTCTTAGCTAAGATTCAAGAACAAGGT
AAGTTGACCAAGGAATTGGAAGAAGCTATCTTAGTTGCCGAAAAATTAGCAGACGTTGAAGAACTCTATCTTCCTTATAA
GGAAAAGCGTCGTACCAAGGCAACCATTGCCCGTGAAGCTGGACTCTTTCCTCTTGCTCGCTTGATTTTGCAGAATATAG
TTGACTTAGAGAAAGAAGCTGAAAAGTTCGTCTGTGAAGGATTTGCGACTGGCAAGGAAGCCTTGACCGGTGCAGTTGAT
ATTTTGGTCGAAGCCTTATCGGAAGATGTGACCTTGCGTTCTATGACTTATCAGGAAGTGCTGAGACACTCTAAACTTAC
TTCTCAAGCCAAGGATGAAAGTCTTGATGAAAAGCAGGTTTTTCAGATTTATTATGATTTTTCAGAGACAGTTGGAACTA
TGCAAGGCTATCGTACCTTGGCTCTCAATCGTGGGGAGAAACTTGGTGTCTTGAAGATCGGTTTTGAACATGCGACGGAC
CGTATTCTTGCCTTCTTTGCTACTCGTTTCAAGGTGAAAAATGTTTATATTGATGAAGTTGTTCAGCAATCCGTTAAGAA
AAAGGTCTTGCCTGCTATCGAGCGTCGTATTCGGACAGAATTAACTGAGAAAGCTGAAGAAGGAGCTATCCAACTTTTTT
CTGACAATCTGCGCAATCTCCTCTTGGTTGCTCCACTGAAAGGGCGCGTGGTTCTTGGATTTGACCCAGCCTTTCGTACA
GGTGCCAAGTTAGCTGTCGTGGATGCAACAGGAAAAATGCTGACAACTCAGGTTATTTATCCTGTTAAACCAGCATCAGC
TCGTCAAATCGAAGAAGCCAAGAAAGATTTAGCAGATTTAATTGGTCAATACGGTGTAGAGATTATTGCCATTGGAAATG
GAACGGCCAGTCGTGAAAGTGAAGCTTTTGTAGCGGAAGTTCTGAAAGATTTCCCTGAAGTCAGCTATGTTATCGTTAAT
GAAAGTGGTGCTTCTGTCTATTCTGCCAGCGAACTTGCTCGTCAGGAGTTTCCAGACTTGACCGTTGAAAAACGTTCTGC
CATTTCTATCGCCCGTCGTTTGCAAGATCCTCTTGCGGAATTGGTCAAAATCGATCCTAAGTCAATTGGTGTCGGTCAAT
ACCAACACGATGTCAGTCAGAAGAAACTATCTGAGAGTCTGGACTTTGTTGTCGATACAGTGGTTAACCAAGTTGGTGTC
AATGTCAATACAGCTAGCCCAGCTCTTCTTTCACACGTAGCTGGACTCAACAAAACTATCTCTGAAAATATTGTCAAATA
CCGCGAGGAAGAAGGAAAAATCACTTCACGCGCCCAAATCAAGAAAGTTCCTCGTCTGGGAGCCAAGGCCTTTGAGCAGG
CTGCTGGTTTCCTTCGTATCCCTGAAAGTAGCAATATCCTTGATAATACAGGAGTTCACCCAGAGAATTACACTGCAGTT
AAGGAACTCTTCAAACGTTTAGATATTAAAGACCTAAACGAAGAAGCCCAAAGCAAACTCAAGTCCCTTTCAGTCAAGGA
AATGGCTCAAGAGCTAGACCTCGGTCCAGAAACCCTTAAAGATATCATTGCAGATCTTCTCAAACCAGGTCGAGATTTCC
GTGATTCCTTTGACGCACCTGTGCTTCGCCAAGATGTCCTAGATATCAAAGACCTAGTGGTAGGTCAGAAGCTAGAAGGT
GTTGTGCGTAACGTTGTTGACTTCGGTGCCTTCGTTGATATCGGGATTCACGAGGACGGCTTGATTCATATTTCTCATAT
GAGTCGCAAGTTTATCAAACACCCTAGTCAAGTGGTGTCAGTTGGAGATTTGGTGACCGTTTGGGTCAAGAAAATTGATA
CTGAACGTGAAAAAGTTAATCTGTCGCTCCTCGCTCCAAATGAAACTGACTGA

Upstream 100 bases:

>100_bases
TTGTAAATTTGACAGCCATAGGTGTACCTCGATTCTAAATTCTACCTCTATTATACTATTATTTTGCGGAAAAGGGAGTT
TTTTAATTTGTTTTCGATAG

Downstream 100 bases:

>100_bases
TTATGTCAAGCAGGTTTCACTAGAAGACTTCGGGAGAGCTTTTATCCATCATGTCCAGTGGAATAGGCGTCTACGTTCGA
CAGGTGGGCGATTTTTCCCC

Product: S1 RNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MIHFENLFKPRQLRLTVVRLLTSSVLSTTSKQCFELTSSVLSTTSKQYFEQPAASFLVCFLIFIEYEKDWRKPSSLWYNR
FMDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQG
KLTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVD
ILVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATD
RILAFFATRFKVKNVYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRT
GAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVN
ESGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGV
NVNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYTAV
KELFKRLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEG
VVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVNLSLLAPNETD

Sequences:

>Translated_790_residues
MIHFENLFKPRQLRLTVVRLLTSSVLSTTSKQCFELTSSVLSTTSKQYFEQPAASFLVCFLIFIEYEKDWRKPSSLWYNR
FMDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQG
KLTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVD
ILVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATD
RILAFFATRFKVKNVYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRT
GAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVN
ESGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGV
NVNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYTAV
KELFKRLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEG
VVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVNLSLLAPNETD
>Mature_790_residues
MIHFENLFKPRQLRLTVVRLLTSSVLSTTSKQCFELTSSVLSTTSKQYFEQPAASFLVCFLIFIEYEKDWRKPSSLWYNR
FMDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYRKDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQG
KLTKELEEAILVAEKLADVEELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVD
ILVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTLALNRGEKLGVLKIGFEHATD
RILAFFATRFKVKNVYIDEVVQQSVKKKVLPAIERRIRTELTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRT
GAKLAVVDATGKMLTTQVIYPVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVN
ESGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSESLDFVVDTVVNQVGV
NVNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQIKKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYTAV
KELFKRLDIKDLNEEAQSKLKSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEG
VVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVNLSLLAPNETD

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=771, Percent_Identity=32.5551232166018, Blast_Score=370, Evalue=1e-102,
Organism=Homo sapiens, GI27597090, Length=719, Percent_Identity=22.1140472878999, Blast_Score=89, Evalue=1e-17,
Organism=Escherichia coli, GI87082262, Length=726, Percent_Identity=44.2148760330579, Blast_Score=543, Evalue=1e-155,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=49.3333333333333, Blast_Score=78, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17511129, Length=743, Percent_Identity=31.0901749663526, Blast_Score=275, Evalue=7e-74,
Organism=Caenorhabditis elegans, GI17552892, Length=348, Percent_Identity=27.5862068965517, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI62484314, Length=786, Percent_Identity=34.0966921119593, Blast_Score=382, Evalue=1e-106,
Organism=Drosophila melanogaster, GI24640080, Length=585, Percent_Identity=23.2478632478632, Blast_Score=100, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 88390; Mature: 88390

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50126 S1 ; PS00283 SOYBEAN_KUNITZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHFENLFKPRQLRLTVVRLLTSSVLSTTSKQCFELTSSVLSTTSKQYFEQPAASFLVCF
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIFIEYEKDWRKPSSLWYNRFMDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYR
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH
KDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQGKLTKELEEAILVAEKLADVE
HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
ELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVD
HHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
ILVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALNRGEKLGVLKIGFEHATDRILAFFATRFKVKNVYIDEVVQQSVKKKVLPAIERRIRTE
EECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRTGAKLAVVDATGKMLTTQVIY
HHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHCCCEEEEEECCCCEEEHEEEE
PVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVN
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEE
ESGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQ
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
KKLSESLDFVVDTVVNQVGVNVNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHH
KKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYTAVKELFKRLDIKDLNEEAQSKL
HHHHHCCHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCHHHHHHH
KSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEG
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVN
HHHHHHHHCCEEEECCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHEE
LSLLAPNETD
EEEECCCCCC
>Mature Secondary Structure
MIHFENLFKPRQLRLTVVRLLTSSVLSTTSKQCFELTSSVLSTTSKQYFEQPAASFLVCF
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIFIEYEKDWRKPSSLWYNRFMDKKYEKISQDLGVTLKQIDTVLSLTAEGATIPFIARYR
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHH
KDMTGSLDEVAIKAIIDLDKSLTNLNDRKEAVLAKIQEQGKLTKELEEAILVAEKLADVE
HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
ELYLPYKEKRRTKATIAREAGLFPLARLILQNIVDLEKEAEKFVCEGFATGKEALTGAVD
HHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
ILVEALSEDVTLRSMTYQEVLRHSKLTSQAKDESLDEKQVFQIYYDFSETVGTMQGYRTL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALNRGEKLGVLKIGFEHATDRILAFFATRFKVKNVYIDEVVQQSVKKKVLPAIERRIRTE
EECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTEKAEEGAIQLFSDNLRNLLLVAPLKGRVVLGFDPAFRTGAKLAVVDATGKMLTTQVIY
HHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECCHHHHCCCEEEEEECCCCEEEHEEEE
PVKPASARQIEEAKKDLADLIGQYGVEIIAIGNGTASRESEAFVAEVLKDFPEVSYVIVN
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEE
ESGASVYSASELARQEFPDLTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQ
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
KKLSESLDFVVDTVVNQVGVNVNTASPALLSHVAGLNKTISENIVKYREEEGKITSRAQI
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHH
KKVPRLGAKAFEQAAGFLRIPESSNILDNTGVHPENYTAVKELFKRLDIKDLNEEAQSKL
HHHHHCCHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCHHHHHHH
KSLSVKEMAQELDLGPETLKDIIADLLKPGRDFRDSFDAPVLRQDVLDIKDLVVGQKLEG
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHH
VVRNVVDFGAFVDIGIHEDGLIHISHMSRKFIKHPSQVVSVGDLVTVWVKKIDTEREKVN
HHHHHHHHCCEEEECCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHEE
LSLLAPNETD
EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]