| Definition | Streptococcus pneumoniae Hungary19A-6, complete genome. |
|---|---|
| Accession | NC_010380 |
| Length | 2,245,615 |
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The map label for this gene is lytB [H]
Identifier: 169833044
GI number: 169833044
Start: 982174
End: 984282
Strand: Direct
Name: lytB [H]
Synonym: SPH_1067
Alternate gene names: 169833044
Gene position: 982174-984282 (Clockwise)
Preceding gene: 169833969
Following gene: 169833180
Centisome position: 43.74
GC content: 38.93
Gene sequence:
>2109_bases ATGAAGAAAGTAAGATTTATTTTTTTAGCTCTGCTATTTTTCTTAGCTAGTCCAGAGGGTGCAATGGCTAGTGATGGTAC TTGGCAAGGAAAACAGTATCTGAAAGAAGATGGCAGTCAAGCAGCGAATGAGTGGATTTTTGATACTCATTATCAATCTT GGTTCTATATAAAAGCAGATGCTAACTATGCTGAAAATGAATGGCTAAAGCAAGGTGACGACTATTTTTACCTCAAATCT GGTGGCTATATGGCCAAATCAGAATGGGTAGAAGACAAGGGAGCCTTTTATTATCTTGACCAAGATGGAAAGATGAAAAG AAATGCTTGGGTAGGAACTTCCTATGTTGGTGCAACAGGTGCCAAAGTAATAGAAGACTGGATCTATGATTCTCAATACG ATGCTTGGTTTTATATCAAAGCAGATGGACAGCACGCAGAGAAAGAATGGCTCCAAATTAAAGGGAAGGACTATTATTTC AAATCCGGTGGTTATCTACTGACAAGTCAGTGGATTAATCAAGCTTATGTGAATGCTAGTGGTGCCAAAGTACAGCAAGG TTGGCTTTTTGACAAACAATACCAATCTTGGTTTTACATCAAAGAAAATGGAAACTATGCTGATAAAGAATGGATTTTCG AGAATGGTCACTATTATTATCTAAAATCCGGTGGCTACATGGCAGCCAATGAATGGATTTGGGATAAGGAATCTTGGTTT TATCTCAAATTTGATGGGAAAATAGCTGAAAAAGAATGGGTCTACGATTCTCATAGTCAAGCTTGGTACTACTTCAAATC CGGTGGCTACATGGCAGCCAATGAATGGATTTGGGATAAGGAATCTTGGTTTTACCTCAAGTTTGATGGCAAAATGGCTG AAAAAGAATGGGTCTACGATTCTCATAGTCAAGCCTGGTACTACTTCAAATCCGGTGGTTACATGACAGCCAATGAATGG ATTTGGGATAAGGAATCTTGGTTTTATCTCAAATCTGATGGGAAAATAGCTGAAAAAGAATGGGTCTACGATTCTCATAG TCAAGCTTGGTACTACTTCAAATCCGGTGGTTACATGACAGCCAATGAATGGATTTGGGATAAGGAATCTTGGTTTTACC TCAAGTCTGATGGCAAAATGGCTGAAAAAGAATGGGTCTACGATTCTCATAGTCAAGCCTGGTACTACTTCAAATCTGGT GGCTACATGGCGAAAAATGAGACAGTAGATGGTTATCAGCTTGGAAGCGATGGTAAATGGCTTGGAGGAAAAGCTACAAA TAAAAATGCTGCTTACTATCAAGTAGTGCCTGTCACAGCCAATGTTTATGATTCAGATGGTGAAAAGCTTTCCTATATAT CGCAAGGTAGTGTCGTATGGCTAGATAAGGATAGAAAAAGTGATGACAAGCGCTTGGCTATTACTATTTCTGGTTTGTCA GGCTATATGAAAACAGAAGATTTACAAGCGCTAGATGCTAGTAAGGACTTTATCCCTTATTATGAGAGTGATGGCCACCG TTTTTATCACTATGTGGCTCAGAATGCTAGTATCCCAGTAGCTTCTCATCTTTCTGATATGGAAGTAGGCAAGAAATATT ATTCGGCAGATGGCCTGTATTTTGATGGTTTTAAGCTTGAGAATCCCTTCCTTTTCAAAGATTTAACAGAGGCTACAAAC TACAGTGCTGAAGAATTGGATAAGGTATTTAGTTTGCTAAACATTAATAATAGCCTTTTGGAGAACAAGGGCGCTACTTT TAAGGAAGCCGAAGAACATTACCATATCAATGCCCTTTATCTCCTTGCCCATAGTGCCCTAGAAAGTAACTGGGGAAGAA GTAAAATTGCCAAAGATAAGAATAATTTCTTTGGCATTACAGCCTATGATACGACCCCTTACCTTTCTGCCAAGACATTT GATGATGTGGATAAGGGAATTTTAGGTGCAACCAAGTGGATTAAGGAAAATTATATCGATAGGGGAAGAACTTTCCTTGG AAACAAGGCTTCTGGTATGAATGTGGAATATGCTTCAGACCCTTATTGGGGCGAAAAAATTGCTAGTGTGATGATGAAAA TCAATGAGAAGCTAGGTGGCAAAGATTAG
Upstream 100 bases:
>100_bases AAACTGCAATCAATCTGTTCTTGATTTTTTATTAGTTTGTAATATGAATTTAGGAGAATTTTGGTACAATAAAATAAATA AGAACAGAGGAAGAAGGTTA
Downstream 100 bases:
>100_bases TACTATAAGTGAATATGATTTGAGTGAATAGTAAGTTAAAAATCCTGATTTCAAGTAAAATCAGGATTTTTTCATGGATG CAATTTTTTTTGGAGTCTGG
Product: endo-beta-N-acetylglucosaminidase
Products: NA
Alternate protein names: Murein hydrolase [H]
Number of amino acids: Translated: 702; Mature: 702
Protein sequence:
>702_residues MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWIFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKS GGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATGAKVIEDWIYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYF KSGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEW IWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSG GYMAKNETVDGYQLGSDGKWLGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLYFDGFKLENPFLFKDLTEATN YSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTF DDVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD
Sequences:
>Translated_702_residues MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWIFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKS GGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATGAKVIEDWIYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYF KSGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEW IWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSG GYMAKNETVDGYQLGSDGKWLGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLYFDGFKLENPFLFKDLTEATN YSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTF DDVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD >Mature_702_residues MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWIFDTHYQSWFYIKADANYAENEWLKQGDDYFYLKS GGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATGAKVIEDWIYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYF KSGGYLLTSQWINQAYVNASGAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYDSHSQAWYYFKSGGYMTANEW IWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSG GYMAKNETVDGYQLGSDGKWLGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLYFDGFKLENPFLFKDLTEATN YSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALYLLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTF DDVDKGILGATKWIKENYIDRGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD
Specific function: Plays an important role in cell wall degradation and cell separation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 15 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018337 - InterPro: IPR013338 - InterPro: IPR002901 [H]
Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase [H]
EC number: =3.2.1.96 [H]
Molecular weight: Translated: 81954; Mature: 81954
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWIFDTHYQSWFYIKAD CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCEEECCCCEEEEEEEC ANYAENEWLKQGDDYFYLKSGGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATG CCCCCHHHHHCCCCEEEEECCCEEEHHHCCCCCCCEEEECCCCCEECCEEECCCCCCCCH AKVIEDWIYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYFKSGGYLLTSQWINQAYVNAS HHHHHHHHCCCCCCEEEEEEECCCCCCCHHEEECCCEEEEECCCEEEEHHHHHHHEECCC GAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF CCEEECCCEECCCCCEEEEEEECCCCCCCEEEEECCCEEEEECCCEEEECCEEECCCCEE YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYD EEEECCCCCCCEEEECCCCCEEEEECCCCEEEECCEEECCCCEEEEEECCCCCCCCCCCC SHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMT CCCCEEEEECCCCEEECCCEEECCCCEEEEECCCCCCCHHCEECCCCCEEEEECCCCEEE ANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSGGYMAKNETVDGYQLGSDGKW CCCEEECCCCEEEEECCCCCCCHHCCCCCCCCEEEEECCCCEEECCCCCCCEEECCCCCC LGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS CCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEEECCC GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLY CCCCCCCHHHHCCCCCCCCCEECCCCEEEEEEECCCCCCHHHCCCHHHHHHHHCCCCCEE FDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALY ECCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCEEEEEEE LLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTFDDVDKGILGATKWIKENYID EEHHHHHHCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD CCCEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKKVRFIFLALLFFLASPEGAMASDGTWQGKQYLKEDGSQAANEWIFDTHYQSWFYIKAD CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCEEECCCCEEEEEEEC ANYAENEWLKQGDDYFYLKSGGYMAKSEWVEDKGAFYYLDQDGKMKRNAWVGTSYVGATG CCCCCHHHHHCCCCEEEEECCCEEEHHHCCCCCCCEEEECCCCCEECCEEECCCCCCCCH AKVIEDWIYDSQYDAWFYIKADGQHAEKEWLQIKGKDYYFKSGGYLLTSQWINQAYVNAS HHHHHHHHCCCCCCEEEEEEECCCCCCCHHEEECCCEEEEECCCEEEEHHHHHHHEECCC GAKVQQGWLFDKQYQSWFYIKENGNYADKEWIFENGHYYYLKSGGYMAANEWIWDKESWF CCEEECCCEECCCCCEEEEEEECCCCCCCEEEEECCCEEEEECCCEEEECCEEECCCCEE YLKFDGKIAEKEWVYDSHSQAWYYFKSGGYMAANEWIWDKESWFYLKFDGKMAEKEWVYD EEEECCCCCCCEEEECCCCCEEEEECCCCEEEECCEEECCCCEEEEEECCCCCCCCCCCC SHSQAWYYFKSGGYMTANEWIWDKESWFYLKSDGKIAEKEWVYDSHSQAWYYFKSGGYMT CCCCEEEEECCCCEEECCCEEECCCCEEEEECCCCCCCHHCEECCCCCEEEEECCCCEEE ANEWIWDKESWFYLKSDGKMAEKEWVYDSHSQAWYYFKSGGYMAKNETVDGYQLGSDGKW CCCEEECCCCEEEEECCCCCCCHHCCCCCCCCEEEEECCCCEEECCCCCCCEEECCCCCC LGGKATNKNAAYYQVVPVTANVYDSDGEKLSYISQGSVVWLDKDRKSDDKRLAITISGLS CCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCEEEEEEECCC GYMKTEDLQALDASKDFIPYYESDGHRFYHYVAQNASIPVASHLSDMEVGKKYYSADGLY CCCCCCCHHHHCCCCCCCCCEECCCCEEEEEEECCCCCCHHHCCCHHHHHHHHCCCCCEE FDGFKLENPFLFKDLTEATNYSAEELDKVFSLLNINNSLLENKGATFKEAEEHYHINALY ECCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHCEEEEEEE LLAHSALESNWGRSKIAKDKNNFFGITAYDTTPYLSAKTFDDVDKGILGATKWIKENYID EEHHHHHHCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH RGRTFLGNKASGMNVEYASDPYWGEKIASVMMKINEKLGGKD CCCEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10096093; 11544234 [H]