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The map label for this gene is deoC [H]

Identifier: 169832792

GI number: 169832792

Start: 868047

End: 868709

Strand: Direct

Name: deoC [H]

Synonym: SPH_0942

Alternate gene names: 169832792

Gene position: 868047-868709 (Clockwise)

Preceding gene: 169832459

Following gene: 169834476

Centisome position: 38.66

GC content: 41.78

Gene sequence:

>663_bases
ATGAAATTAAATAAATATATCGATCATACGCTTTTAAAACAAGATGCAAAGAAAAAACAAATTGATAGTTTGTTGTCTGA
GGCTAGAGAGTATGACTTTGCCAGTGTTTGCGTTAATCCGACCTGGGTTGAACATGCTAAAAAAGGACTTGAAGGCACAG
ATGCTAAGGTTTGCACAGTAGTAGGTTTCCCTTTGGGAGCAACAACTTCAGCCGTGAAAGCATTTGAGACAAAAGAAGCT
ATCCAAAATGGTGCAGATGAGATTGATATGGTGATCAATGTTGGAGCTCTCAAATCAGGTAATTTAGCCTTGGTTGAGTC
AGATATTCGCGCAGTAGTGGAAGCAAGTGGTGATAAGTTAGTGAAAGTCATTATTGAAGCTTGCCTTCTGACAGACCAAG
AAAAAATTGTTGTTTGCCAATTGGCCCAAAAAGCTGGGGCTGACTTTGTTAAAACATCTACTGGCTTTTCAACTGGTGGT
GCTACGATAGCAGATGTTAGATTAATGTGTGAAACAGTTGGATCTGATATGGGAGTCAAGGCTGCTGGTGGAGCTCGTTC
TTATGCAGATGCTCTTGCCTTTGTCGAAGCAGGTGCGACCCGTATCGGAACGTCAGCTGGGGTAGCTATTTTAAAAGGAG
AATTGGCAGATGGCGACTACTGA

Upstream 100 bases:

>100_bases
CTAGTTACAGATTTTCAAAAATATGTTAAAATAAATGATAGGGTGCAAAGTTTACGAGAAATTATAGAAACCATCTCATA
AACCGCAGGAGAATCCGAAT

Downstream 100 bases:

>100_bases
GTTGATTGAACTGGCAATTGAAACCAGCAAACATGCCTATGTCCCCTATTCTCACTTTCCTATCGGAGCAGTTTTAGTAG
CCAAAGACGGAAGTGTTTAC

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYDFASVCVNPTWVEHAKKGLEGTDAKVCTVVGFPLGATTSAVKAFETKEA
IQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKLVKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGG
ATIADVRLMCETVGSDMGVKAAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY

Sequences:

>Translated_220_residues
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYDFASVCVNPTWVEHAKKGLEGTDAKVCTVVGFPLGATTSAVKAFETKEA
IQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKLVKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGG
ATIADVRLMCETVGSDMGVKAAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY
>Mature_220_residues
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYDFASVCVNPTWVEHAKKGLEGTDAKVCTVVGFPLGATTSAVKAFETKEA
IQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKLVKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGG
ATIADVRLMCETVGSDMGVKAAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=175, Percent_Identity=36, Blast_Score=82, Evalue=5e-16,
Organism=Escherichia coli, GI1790841, Length=207, Percent_Identity=35.2657004830918, Blast_Score=88, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17533015, Length=212, Percent_Identity=29.2452830188679, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 22992; Mature: 22992

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYDFASVCVNPTWVEHAKKGLEGTDAKVCTV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCHHHHHHHCCCCCCCCEEEEE
VGFPLGATTSAVKAFETKEAIQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKL
EECCCCCHHHHHHHHHHHHHHHCCCCCEEHEEEECCCCCCCEEEEHHHHHHHHHCCCHHH
VKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGGATIADVRLMCETVGSDMGVK
HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC
AAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY
CCCCCHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MKLNKYIDHTLLKQDAKKKQIDSLLSEAREYDFASVCVNPTWVEHAKKGLEGTDAKVCTV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCHHHHHHHCCCCCCCCEEEEE
VGFPLGATTSAVKAFETKEAIQNGADEIDMVINVGALKSGNLALVESDIRAVVEASGDKL
EECCCCCHHHHHHHHHHHHHHHCCCCCEEHEEEECCCCCCCEEEEHHHHHHHHHCCCHHH
VKVIIEACLLTDQEKIVVCQLAQKAGADFVKTSTGFSTGGATIADVRLMCETVGSDMGVK
HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC
AAGGARSYADALAFVEAGATRIGTSAGVAILKGELADGDY
CCCCCHHHHHHHHHHHHCCHHCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA