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The map label for this gene is ydiF [H]

Identifier: 169832773

GI number: 169832773

Start: 1102651

End: 1104552

Strand: Direct

Name: ydiF [H]

Synonym: SPH_1207

Alternate gene names: 169832773

Gene position: 1102651-1104552 (Clockwise)

Preceding gene: 169832956

Following gene: 169833070

Centisome position: 49.1

GC content: 41.54

Gene sequence:

>1902_bases
ATGATTATTTTACAAGTTAATAAAATTGAACGTTCTTTTGCAGGAGAGGTTCTTTTCGATAATATCAACCTGCAGGTTGA
TGAACGAGATCGGATTGCCCTTGTTGGGAAAAATGGTGCAGGTAAGTCTACTCTTTTGAAGATTTTAGTTGGAGAAGAGG
AGCCAACTAGTGGAGAAATCAATAAGAAAAAAGATATTTCTCTGTCTTACCTAGCTCAAGATAGCCGTTTTGAGTCTGAA
AATACCATCTATGATGAGATGCTTCATGTCTTTGATGACTTACGTCGGACAGATAAACAACTTCGTCAGATGGAGTTGGA
GATGGGTGAAAAGTCTGGCGATGAATTGGATAAACTGATGTCAGATTACGACCACTTATCTGAGAATTTTCGCCAAGCAG
GCGGCTTTACCTATGAAGCTGATATTCGAGCGATTTTGAATGGATTCAAGTTTGACGAGTCTATGTGGCAGATGAAAATA
GCTGAACTTTCAGGTGGTCAAAATACTCGTTTGGCTCTAGCTAAAATGCTCCTTGAAAAGCCCAATCTCTTGGTCTTGGA
CGAGCCAACTAACCACTTGGATATTGAAACCATCTCCTGGCTAGAGAATTACTTGGTAAACTATAGCGGTGCCCTCATTA
TCGTCAGCCACGACCGTTATTTCTTGGACAAGGTTGCGACAATTACGCTAGATTTGACCAAGCATTCCTTGGATCGCTAT
GTGGGGAATTACTCTCGTTTTGTCGAGTTGAAGGAGCAAAAGCTAGCTACTGAGGCAAAAAACTATGAAAAGCAACAGAA
GGAAATCGCTGCTCTGGAAGACTTTGTCAACCGCAATTTAGTCCGAGCTTCAACGACTAAACGTGCCCAATCTCGCCGAA
AACAACTGGAAAAAATGGAACGTTTGGACAAGCCGGAAGCTGGCAAGAAATCAGCCAATATGACCTTCCAGTCTGAAAAA
ACGTCTGGTAATGTTGTATTGACTGTTGAAAATGCGGCTGTTGGCTATGATGGGGAAGTCCTGTCACAACCGATTAACCT
AGACCTTCGTAAGATGAATGCTGTTGCTATCGTTGGTCCCAATGGTATCGGAAAATCAACCTTTATCAAATCAATCGTGG
ATCAAATTCCGTTTATCAAGGGAGAAAAGCGCTTTGGCGCTAATGTTGAGGTGGGTTACTATGACCAAACCCAAAGCAAG
CTGACACCAAGTAATACTGTATTGGATGAACTCTGGAATGACTTTAAACTGACATCAGAAGTTGAAATCCGCAACCGTCT
TGGGGCCTTCCTTTTCTCAGGAGATGATGTTAAAAAATCAGTCGGCATGCTATCTGGTGGCGAAAAAGCTCGTTTGCTTT
TAGCTAAATTATCTATGGAAAACAACAACTTCTTGATTCTGGACGAGCCGACCAACCACTTGGATATTGATAGCAAGGAA
GTGTTGGAAAATGCTTTGATTGACTTTGACGGTACCTTGCTTTTTGTCAGTCACGACCGTTACTTTATCAATCGTGTGGC
AACTCATGTTTTGGAATTGTCTGAGAATGGCTCGGCTCTCTACCTTGGAGACTACGATTACTATATTGAGAAGAAAGTAG
AAGTAGAAATGAGTCAGATTGAGGAAGCTTCAACTAACAATCAAGCAAAGGAAGCAAGTCCAGTCAACGATTATCAGGCC
CAGAAAGAAAGTCAAAAAGAAGTTCGCAAACTCATGCGACAAATTGAAAGTCTAGAAACTGAAATCGAAGAGTTAGAAAG
TCAAAGTCAAGCCATTTCTGAACAAATGTTGGAAACAAACGATGCCGATAAACTCATGGAATTGCAGGCTGAGCTGGACA
AAATCAGCCATCGTCAGGAAGAAGCTATGCTTGAATGGGAAGAATTATCAGAGCAGGTGTAA

Upstream 100 bases:

>100_bases
ATAAAATATACATAATTTAGTTTATTTTATGTTATAAAAGTTGTACTAAAAGACTTACGATTATCTTGAATGACTTAGGG
AAACATGCTATACTACTTGT

Downstream 100 bases:

>100_bases
AGATGGAACATCTTGGAAAAGTATTTCGTGAATTTCGAACAAGTGGAAATTATTCCTTAAAGGAGGCAGCAGGGGAGTCC
TGTTCAACCTCTCAGTTATC

Product: ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MIILQVNKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEINKKKDISLSYLAQDSRFESE
NTIYDEMLHVFDDLRRTDKQLRQMELEMGEKSGDELDKLMSDYDHLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKI
AELSGGQNTRLALAKMLLEKPNLLVLDEPTNHLDIETISWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
VGNYSRFVELKEQKLATEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKMERLDKPEAGKKSANMTFQSEK
TSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGPNGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSK
LTPSNTVLDELWNDFKLTSEVEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEKKVEVEMSQIEEASTNNQAKEASPVNDYQA
QKESQKEVRKLMRQIESLETEIEELESQSQAISEQMLETNDADKLMELQAELDKISHRQEEAMLEWEELSEQV

Sequences:

>Translated_633_residues
MIILQVNKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEINKKKDISLSYLAQDSRFESE
NTIYDEMLHVFDDLRRTDKQLRQMELEMGEKSGDELDKLMSDYDHLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKI
AELSGGQNTRLALAKMLLEKPNLLVLDEPTNHLDIETISWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
VGNYSRFVELKEQKLATEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKMERLDKPEAGKKSANMTFQSEK
TSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGPNGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSK
LTPSNTVLDELWNDFKLTSEVEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEKKVEVEMSQIEEASTNNQAKEASPVNDYQA
QKESQKEVRKLMRQIESLETEIEELESQSQAISEQMLETNDADKLMELQAELDKISHRQEEAMLEWEELSEQV
>Mature_633_residues
MIILQVNKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEINKKKDISLSYLAQDSRFESE
NTIYDEMLHVFDDLRRTDKQLRQMELEMGEKSGDELDKLMSDYDHLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKI
AELSGGQNTRLALAKMLLEKPNLLVLDEPTNHLDIETISWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
VGNYSRFVELKEQKLATEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKMERLDKPEAGKKSANMTFQSEK
TSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGPNGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSK
LTPSNTVLDELWNDFKLTSEVEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEKKVEVEMSQIEEASTNNQAKEASPVNDYQA
QKESQKEVRKLMRQIESLETEIEELESQSQAISEQMLETNDADKLMELQAELDKISHRQEEAMLEWEELSEQV

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=536, Percent_Identity=32.8358208955224, Blast_Score=259, Evalue=4e-69,
Organism=Homo sapiens, GI27881506, Length=551, Percent_Identity=30.3085299455535, Blast_Score=219, Evalue=5e-57,
Organism=Homo sapiens, GI10947137, Length=551, Percent_Identity=30.3085299455535, Blast_Score=219, Evalue=6e-57,
Organism=Homo sapiens, GI69354671, Length=547, Percent_Identity=31.9926873857404, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI10947135, Length=562, Percent_Identity=31.3167259786477, Blast_Score=206, Evalue=6e-53,
Organism=Escherichia coli, GI1789751, Length=650, Percent_Identity=30.9230769230769, Blast_Score=306, Evalue=2e-84,
Organism=Escherichia coli, GI2367384, Length=522, Percent_Identity=35.2490421455939, Blast_Score=303, Evalue=2e-83,
Organism=Escherichia coli, GI1787041, Length=534, Percent_Identity=33.8951310861423, Blast_Score=292, Evalue=5e-80,
Organism=Escherichia coli, GI1787182, Length=650, Percent_Identity=31.5384615384615, Blast_Score=275, Evalue=6e-75,
Organism=Escherichia coli, GI87081834, Length=228, Percent_Identity=29.8245614035088, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1788165, Length=199, Percent_Identity=28.1407035175879, Blast_Score=69, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17559834, Length=555, Percent_Identity=30.2702702702703, Blast_Score=236, Evalue=2e-62,
Organism=Caenorhabditis elegans, GI17555318, Length=532, Percent_Identity=29.8872180451128, Blast_Score=220, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI17553372, Length=492, Percent_Identity=32.1138211382114, Blast_Score=218, Evalue=7e-57,
Organism=Saccharomyces cerevisiae, GI6320874, Length=525, Percent_Identity=31.4285714285714, Blast_Score=237, Evalue=4e-63,
Organism=Saccharomyces cerevisiae, GI6321121, Length=523, Percent_Identity=30.4015296367113, Blast_Score=234, Evalue=3e-62,
Organism=Saccharomyces cerevisiae, GI6324314, Length=385, Percent_Identity=28.051948051948, Blast_Score=124, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6323278, Length=389, Percent_Identity=26.9922879177378, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6325030, Length=389, Percent_Identity=27.7634961439589, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24666836, Length=513, Percent_Identity=35.0877192982456, Blast_Score=263, Evalue=2e-70,
Organism=Drosophila melanogaster, GI24642252, Length=539, Percent_Identity=31.3543599257885, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI18859989, Length=539, Percent_Identity=31.3543599257885, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24641342, Length=532, Percent_Identity=31.7669172932331, Blast_Score=232, Evalue=6e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 72124; Mature: 72124

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILQVNKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEI
CEEEEEEHHHHHHCCCEEEECCEEEECCCCCEEEEECCCCCHHHEEEEEECCCCCCCCCC
NKKKDISLSYLAQDSRFESENTIYDEMLHVFDDLRRTDKQLRQMELEMGEKSGDELDKLM
CCCCCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SDYDHLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKIAELSGGQNTRLALAKMLLEK
HHHHHHHHHHHHHCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PNLLVLDEPTNHLDIETISWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEEEEEHHHHHHHHH
VGNYSRFVELKEQKLATEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKME
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHH
RLDKPEAGKKSANMTFQSEKTSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGP
HCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEECEEEEECC
NGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSKLTPSNTVLDELWNDFKLTSE
CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHH
VEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
HHHHHHHHHEEECCCHHHHHHCCCCCCCHHEEEEEEEECCCCCEEEEECCCCCCCCCHHH
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEKKVEVEMSQI
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEHHHHHHHH
EEASTNNQAKEASPVNDYQAQKESQKEVRKLMRQIESLETEIEELESQSQAISEQMLETN
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DADKLMELQAELDKISHRQEEAMLEWEELSEQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIILQVNKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEI
CEEEEEEHHHHHHCCCEEEECCEEEECCCCCEEEEECCCCCHHHEEEEEECCCCCCCCCC
NKKKDISLSYLAQDSRFESENTIYDEMLHVFDDLRRTDKQLRQMELEMGEKSGDELDKLM
CCCCCCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SDYDHLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKIAELSGGQNTRLALAKMLLEK
HHHHHHHHHHHHHCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCC
PNLLVLDEPTNHLDIETISWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRY
CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEEEEEHHHHHHHHH
VGNYSRFVELKEQKLATEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKME
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHH
RLDKPEAGKKSANMTFQSEKTSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGP
HCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEECEEEEECC
NGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSKLTPSNTVLDELWNDFKLTSE
CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHH
VEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKE
HHHHHHHHHEEECCCHHHHHHCCCCCCCHHEEEEEEEECCCCCEEEEECCCCCCCCCHHH
VLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEKKVEVEMSQI
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEHHHHHHHH
EEASTNNQAKEASPVNDYQAQKESQKEVRKLMRQIESLETEIEELESQSQAISEQMLETN
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DADKLMELQAELDKISHRQEEAMLEWEELSEQV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]