Click here to switch to the map view.

The map label for this gene is ynaK [C]

Identifier: 169832768

GI number: 169832768

Start: 71497

End: 72585

Strand: Direct

Name: ynaK [C]

Synonym: SPH_0095

Alternate gene names: 169832768

Gene position: 71497-72585 (Clockwise)

Preceding gene: 169834308

Following gene: 169832446

Centisome position: 3.18

GC content: 36.64

Gene sequence:

>1089_bases
ATGTTACAGATTGAATATGTAGATATAAAATCCATTAAACCATATCACAAAAACGCTAGGCATAATGACGGAGAGGCAAC
AGAGAAAGTTGCTGCATCCATAAAAGCTTTTGGTTTTCAGCAACCTATCTTAGTAGATGATAATAACATCATTATTACAG
GACATACTAGGCTAAAGGCTGCTCTTTCTTTAGGTATAGACACAATACCTATCGCTCACGCTGTAAACCTCACAGATGAG
CAGATAAAAGCTTATAGACTAGCAGATAATCGAGTTGCTGAGTATTCAACGTGGGACTCAGAATTATTAAATATTGAGCT
TTCTCAATTTGAAACAATAGATATGGCTCAGTTTGGTTTTGAGTTATCAGTTACAGGGTTCAACTTTGGTAACGAGGAGG
AGCAGCAAGAGGAAACTGAAAACGAGGAGGAAGATGCTGAGGATTTTCACAGAGACACAACTATAAATCAGTACAATCTT
TTTCATTATGACGATACAAGGGTTGAGGGTTTTTATAACATGCCTAAAATCGAGGGCGTGGATCATATTCCTAAAGATTT
TCAAGGCTTTAATTATGTTTTAAATAAACCAGATTACAGCTCATGCGTGCATTTTTTCCTAGATGATTATCAATTTGAAA
GAATATGGCAAAGACCAGACTTTTACATTGAAAAGCTGCTAGAATTTGATAGCGCCTTAGCTCCGGATTTTAGCTTATAT
CTTGATATGCCTATCGCTATGCAAGTATGGAACATTTACAGGTCAAGGCTGATAGGTCAGATTATGCAAGATTACGGCCT
TACAGTTATCCCTACTGTATCGTGGGCTAGTGAGGAAAGCTTTGATTTTTGTTTTGACGGCTTGCCTAAAAACTCAACGC
TAGCAATCAGTACAATAGGCGTAAAGCAAAACAAAGAGCAGTTTGAGGTATGGAAAAATGGAGTTACTGAGATGATAAAA
CGGTTGACTCCAAAAAGAATTGTAGTATATGGCGGAAAAGTGGAATACGATTATAAAGATATAGAGGTTGTATATTTTGA
AAATGCAACAACGGAAAGGATGAAAGAAAGTGGCACAAAAACTAACTAA

Upstream 100 bases:

>100_bases
TACTAGAAAACGCCATCTTAGATAAATAACCGTAAAAAATCCAAAGCTTATGTATCTATAATCAAGATATATAAGCTTTT
TCGAAAGGAGAGATATGGAG

Downstream 100 bases:

>100_bases
ACTAAAAGATATTTTTAAACATGTTTCAAGTATTGATCTAGGTAAAGAGATTTTATTTGAAGATCTTGAGCTTTACAATA
AAGAAACAGAAACAAGCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: DNA Methylase N-4/N-6 Domain-Containing Protein; DNA Methylase N-4/N-6 Domain Protein; DNA Methylase; DNA Methylase; ParB Domain Protein Nuclease; ParB Domain-Containing Protein Nuclease; Prophage; Methylase DpnIIB; ParB-Like Nuclease; DNA Methylase Protein; ParB-Like Nuclease Domain Family; Site-Specific DNA-Methyltransferase; Phage Related DNA Methyltransferase; Adn Methyltransferase Protein; Adenine Methyltransferase; Prophage LambdaWp4 DNA Methylase; Phage Associated Protein; Transcriptional Regulator; Phage DNA Methylase; Prophage LambdaW1 DNA Methylase; Phage Related DNA Methylase; ParB Family Protein; Adenine Specific DNA Methyltransferase; Fragment Of Site-Specific DNA-Methyltransferase; Phage Methyltransferase

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MLQIEYVDIKSIKPYHKNARHNDGEATEKVAASIKAFGFQQPILVDDNNIIITGHTRLKAALSLGIDTIPIAHAVNLTDE
QIKAYRLADNRVAEYSTWDSELLNIELSQFETIDMAQFGFELSVTGFNFGNEEEQQEETENEEEDAEDFHRDTTINQYNL
FHYDDTRVEGFYNMPKIEGVDHIPKDFQGFNYVLNKPDYSSCVHFFLDDYQFERIWQRPDFYIEKLLEFDSALAPDFSLY
LDMPIAMQVWNIYRSRLIGQIMQDYGLTVIPTVSWASEESFDFCFDGLPKNSTLAISTIGVKQNKEQFEVWKNGVTEMIK
RLTPKRIVVYGGKVEYDYKDIEVVYFENATTERMKESGTKTN

Sequences:

>Translated_362_residues
MLQIEYVDIKSIKPYHKNARHNDGEATEKVAASIKAFGFQQPILVDDNNIIITGHTRLKAALSLGIDTIPIAHAVNLTDE
QIKAYRLADNRVAEYSTWDSELLNIELSQFETIDMAQFGFELSVTGFNFGNEEEQQEETENEEEDAEDFHRDTTINQYNL
FHYDDTRVEGFYNMPKIEGVDHIPKDFQGFNYVLNKPDYSSCVHFFLDDYQFERIWQRPDFYIEKLLEFDSALAPDFSLY
LDMPIAMQVWNIYRSRLIGQIMQDYGLTVIPTVSWASEESFDFCFDGLPKNSTLAISTIGVKQNKEQFEVWKNGVTEMIK
RLTPKRIVVYGGKVEYDYKDIEVVYFENATTERMKESGTKTN
>Mature_362_residues
MLQIEYVDIKSIKPYHKNARHNDGEATEKVAASIKAFGFQQPILVDDNNIIITGHTRLKAALSLGIDTIPIAHAVNLTDE
QIKAYRLADNRVAEYSTWDSELLNIELSQFETIDMAQFGFELSVTGFNFGNEEEQQEETENEEEDAEDFHRDTTINQYNL
FHYDDTRVEGFYNMPKIEGVDHIPKDFQGFNYVLNKPDYSSCVHFFLDDYQFERIWQRPDFYIEKLLEFDSALAPDFSLY
LDMPIAMQVWNIYRSRLIGQIMQDYGLTVIPTVSWASEESFDFCFDGLPKNSTLAISTIGVKQNKEQFEVWKNGVTEMIK
RLTPKRIVVYGGKVEYDYKDIEVVYFENATTERMKESGTKTN

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787628, Length=80, Percent_Identity=40, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42018; Mature: 42018

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIEYVDIKSIKPYHKNARHNDGEATEKVAASIKAFGFQQPILVDDNNIIITGHTRLKA
CEEEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCEEEECCHHHHH
ALSLGIDTIPIAHAVNLTDEQIKAYRLADNRVAEYSTWDSELLNIELSQFETIDMAQFGF
HHHCCCCCCCHHEEECCCHHHHHEEEECCCCCCCCCCCCHHHEEEEHHHCCCHHHHHCCE
ELSVTGFNFGNEEEQQEETENEEEDAEDFHRDTTINQYNLFHYDDTRVEGFYNMPKIEGV
EEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCCCCC
DHIPKDFQGFNYVLNKPDYSSCVHFFLDDYQFERIWQRPDFYIEKLLEFDSALAPDFSLY
CCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEE
LDMPIAMQVWNIYRSRLIGQIMQDYGLTVIPTVSWASEESFDFCFDGLPKNSTLAISTIG
ECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCCCCEEEEEEEC
VKQNKEQFEVWKNGVTEMIKRLTPKRIVVYGGKVEYDYKDIEVVYFENATTERMKESGTK
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCEEEEEECCCCHHHHHHCCCC
TN
CC
>Mature Secondary Structure
MLQIEYVDIKSIKPYHKNARHNDGEATEKVAASIKAFGFQQPILVDDNNIIITGHTRLKA
CEEEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCEEEECCHHHHH
ALSLGIDTIPIAHAVNLTDEQIKAYRLADNRVAEYSTWDSELLNIELSQFETIDMAQFGF
HHHCCCCCCCHHEEECCCHHHHHEEEECCCCCCCCCCCCHHHEEEEHHHCCCHHHHHCCE
ELSVTGFNFGNEEEQQEETENEEEDAEDFHRDTTINQYNLFHYDDTRVEGFYNMPKIEGV
EEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCCCCCCC
DHIPKDFQGFNYVLNKPDYSSCVHFFLDDYQFERIWQRPDFYIEKLLEFDSALAPDFSLY
CCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEE
LDMPIAMQVWNIYRSRLIGQIMQDYGLTVIPTVSWASEESFDFCFDGLPKNSTLAISTIG
ECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCCCCEEEEEEEC
VKQNKEQFEVWKNGVTEMIKRLTPKRIVVYGGKVEYDYKDIEVVYFENATTERMKESGTK
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCEEEEEECCCCHHHHHHCCCC
TN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA