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The map label for this gene is tmk [H]

Identifier: 169832724

GI number: 169832724

Start: 964520

End: 965158

Strand: Direct

Name: tmk [H]

Synonym: SPH_1043

Alternate gene names: 169832724

Gene position: 964520-965158 (Clockwise)

Preceding gene: 169833427

Following gene: 169833216

Centisome position: 42.95

GC content: 46.01

Gene sequence:

>639_bases
ATGTCAAAAGGATTTTTAGTCTCTCTTGAGGGACCAGAGGGAGCAGGCAAGACCAGCGTTTTAGAGGCTCTGCTACCAAT
TTTAGAGGTAAAAGGGGTAAAGGTGCTGACGACCCGTGAACCTGGCGGAGTCTTGATTGGGGAGAAGATTCGGGAAGTGA
TTTTGGATCCAAGTCATACTCAGATGGATGCTAAAACAGAGCTACTTCTCTATATTGCCAGTCGCAGACAGCATTTGGTG
GAAAAAGTTCTTCCAGCCCTTGAAGCTGGCAAGTTGGTCATCATGGATCGTTTTATCGATAGTTCTGTTGCCTATCAGGG
ATTTGGTCGTGGCTTAGATATTGAAGCCATTGACTGGCTCAATCAGTTTGCGACAGATGGCCTCAAACCCGATTTGACAC
TCTATTTTGACATCGAGGTGGAAGAAGGGCTGGCTCGTATTGCTGCTAATAGTGACCGCGAGGTTAATCGTTTGGATTTG
GAAGGGTTGGACTTGCATAAAAAAGTTCGTCAAGGCTACCTTTCTCTCCTGGAAAAAGAAGGAAATCGCATTGTCAAGAT
TGATGCTAGTCTCCCTTTGGAGCAAGTTGTGGAAACTACCAAGGCTGTCTTGTTTGACGGAATGGGCTTGGCCAAATGA

Upstream 100 bases:

>100_bases
CTTTGATTTTCATTGAGTATGAAATGAGAAGACAAAAAGATTGTCACAAACCCCTATTTTTTTGATAGAATAGAAGTAGT
AAAAAAGAAATGAGTTAGAC

Downstream 100 bases:

>100_bases
AACAAGATCAACTAAAGGCTTGGCAACCAGCTCAGTTTGACCGTTTTGTCCGTATCTTAGAACAAGACCAGCTCAATCAC
GCCTATCTCTTTTCAGGTTT

Product: thymidylate kinase

Products: NA

Alternate protein names: dTMP kinase [H]

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MSKGFLVSLEGPEGAGKTSVLEALLPILEVKGVKVLTTREPGGVLIGEKIREVILDPSHTQMDAKTELLLYIASRRQHLV
EKVLPALEAGKLVIMDRFIDSSVAYQGFGRGLDIEAIDWLNQFATDGLKPDLTLYFDIEVEEGLARIAANSDREVNRLDL
EGLDLHKKVRQGYLSLLEKEGNRIVKIDASLPLEQVVETTKAVLFDGMGLAK

Sequences:

>Translated_212_residues
MSKGFLVSLEGPEGAGKTSVLEALLPILEVKGVKVLTTREPGGVLIGEKIREVILDPSHTQMDAKTELLLYIASRRQHLV
EKVLPALEAGKLVIMDRFIDSSVAYQGFGRGLDIEAIDWLNQFATDGLKPDLTLYFDIEVEEGLARIAANSDREVNRLDL
EGLDLHKKVRQGYLSLLEKEGNRIVKIDASLPLEQVVETTKAVLFDGMGLAK
>Mature_211_residues
SKGFLVSLEGPEGAGKTSVLEALLPILEVKGVKVLTTREPGGVLIGEKIREVILDPSHTQMDAKTELLLYIASRRQHLVE
KVLPALEAGKLVIMDRFIDSSVAYQGFGRGLDIEAIDWLNQFATDGLKPDLTLYFDIEVEEGLARIAANSDREVNRLDLE
GLDLHKKVRQGYLSLLEKEGNRIVKIDASLPLEQVVETTKAVLFDGMGLAK

Specific function: Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis [H]

COG id: COG0125

COG function: function code F; Thymidylate kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thymidylate kinase family [H]

Homologues:

Organism=Escherichia coli, GI1787340, Length=209, Percent_Identity=38.2775119617225, Blast_Score=116, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6322517, Length=198, Percent_Identity=30.8080808080808, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018095
- InterPro:   IPR018094 [H]

Pfam domain/function: PF02223 Thymidylate_kin [H]

EC number: =2.7.4.9 [H]

Molecular weight: Translated: 23336; Mature: 23205

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS01331 THYMIDYLATE_KINASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGFLVSLEGPEGAGKTSVLEALLPILEVKGVKVLTTREPGGVLIGEKIREVILDPSHT
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCEEHHHHHHHHHCCCCCC
QMDAKTELLLYIASRRQHLVEKVLPALEAGKLVIMDRFIDSSVAYQGFGRGLDIEAIDWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHH
NQFATDGLKPDLTLYFDIEVEEGLARIAANSDREVNRLDLEGLDLHKKVRQGYLSLLEKE
HHHHHCCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHC
GNRIVKIDASLPLEQVVETTKAVLFDGMGLAK
CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKGFLVSLEGPEGAGKTSVLEALLPILEVKGVKVLTTREPGGVLIGEKIREVILDPSHT
CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCEEHHHHHHHHHCCCCCC
QMDAKTELLLYIASRRQHLVEKVLPALEAGKLVIMDRFIDSSVAYQGFGRGLDIEAIDWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHH
NQFATDGLKPDLTLYFDIEVEEGLARIAANSDREVNRLDLEGLDLHKKVRQGYLSLLEKE
HHHHHCCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHC
GNRIVKIDASLPLEQVVETTKAVLFDGMGLAK
CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA