Click here to switch to the map view.

The map label for this gene is ydiC [H]

Identifier: 169832717

GI number: 169832717

Start: 210994

End: 211677

Strand: Direct

Name: ydiC [H]

Synonym: SPH_0242

Alternate gene names: 169832717

Gene position: 210994-211677 (Clockwise)

Preceding gene: 169833429

Following gene: 169832924

Centisome position: 9.4

GC content: 45.32

Gene sequence:

>684_bases
ATGAAAGTATTAGCTTTTGATACGTCCAGCAAGGCTCTTTCTCTGGCTATTTTAGAGGATAAGCAGGTTCTTGCCGAGAC
GACGATTAATATTAAGAAAAATCACAGTATTACTCTTATGCCTGCCATCGATTTTTTGATGGCAAGTTTGGATTGGACAC
CCAAGGATTTGGACCGAATCGTGGTAGCTGAAGGGCCGGGTAGCTATACAGGCTTGCGAATTGCGGTAGCAACTGCTAAG
ACCTTAGCTCACACCCTGAACATCGAGTTGGTTGGTATGTCGAGTCTCTTGGCTCTGGTGCCCCATCAACAAGAAGGTTT
GTTTGTCCCCTTGATGGATGCGCGTCGCAATAATGTTTATGCAGGATTTTATGAAAATGCCAAACCTGTCATGGCAGAAG
CGCACCTATCTTTTGAAGAGGTGCTAGAAAAAGTCAAGGGTACTAGTCAGGTAACCTTTGTCGGAGAAGTTGGCCCCTTT
GTTGAGCAGATTCAAAAACACTTGCCAAGGACTGATTACAAAGAAACATTGCCCAATGCAGCTAATCTAGCTCTTTTGGC
CTGGGACAAGGAAGCAGACTCCTTGCATGATTTTGTGCCGAATTACCTCAAACGAGTCGAGGCTGAGGAAAACTGGCTCA
AGAACCATACCGAGTCTGGCGAGTCTTACATTAAACGCCTATGA

Upstream 100 bases:

>100_bases
TTTAGTTAAGTGAGGGCACTCTTGTCTGGGGGCAAAGAAAATTCCCATGTGCCAGCTTTTGTAGTATAATAGTAAGCAGA
CAAAAAGATAGGAATGTGTT

Downstream 100 bases:

>100_bases
TAGAAATCAAGCGAATTCAACAACAGCCTGACCTAGCTCAAGCCATCTACGCTGTTATGGCAGCTGTTTACCTAGTCAGT
CCTTGGACTCTGGAGCAAAT

Product: glycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRIVVAEGPGSYTGLRIAVATAK
TLAHTLNIELVGMSSLLALVPHQQEGLFVPLMDARRNNVYAGFYENAKPVMAEAHLSFEEVLEKVKGTSQVTFVGEVGPF
VEQIQKHLPRTDYKETLPNAANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL

Sequences:

>Translated_227_residues
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRIVVAEGPGSYTGLRIAVATAK
TLAHTLNIELVGMSSLLALVPHQQEGLFVPLMDARRNNVYAGFYENAKPVMAEAHLSFEEVLEKVKGTSQVTFVGEVGPF
VEQIQKHLPRTDYKETLPNAANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
>Mature_227_residues
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRIVVAEGPGSYTGLRIAVATAK
TLAHTLNIELVGMSSLLALVPHQQEGLFVPLMDARRNNVYAGFYENAKPVMAEAHLSFEEVLEKVKGTSQVTFVGEVGPF
VEQIQKHLPRTDYKETLPNAANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=130, Percent_Identity=26.9230769230769, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 25289; Mature: 25289

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRI
CEEEEEECCCCEEEEEEECCCHHHHHHHEEEECCCCEEEHHHHHHHHHHCCCCHHCCCEE
VVAEGPGSYTGLRIAVATAKTLAHTLNIELVGMSSLLALVPHQQEGLFVPLMDARRNNVY
EEECCCCCCCCEEEEEHHHHHHHHHHCEEEECHHHHHHHCCCCCCCEEEEECCCCCCCEE
AGFYENAKPVMAEAHLSFEEVLEKVKGTSQVTFVGEVGPFVEQIQKHLPRTDYKETLPNA
EEECCCCCCCHHHHCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHCCCC
ANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRI
CEEEEEECCCCEEEEEEECCCHHHHHHHEEEECCCCEEEHHHHHHHHHHCCCCHHCCCEE
VVAEGPGSYTGLRIAVATAKTLAHTLNIELVGMSSLLALVPHQQEGLFVPLMDARRNNVY
EEECCCCCCCCEEEEEHHHHHHHHHHCEEEECHHHHHHHCCCCCCCEEEEECCCCCCCEE
AGFYENAKPVMAEAHLSFEEVLEKVKGTSQVTFVGEVGPFVEQIQKHLPRTDYKETLPNA
EEECCCCCCCHHHHCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCHHHHCCCC
ANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]