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The map label for this gene is yoeC [H]

Identifier: 169832610

GI number: 169832610

Start: 33105

End: 33647

Strand: Direct

Name: yoeC [H]

Synonym: SPH_0046

Alternate gene names: 169832610

Gene position: 33105-33647 (Clockwise)

Preceding gene: 169833137

Following gene: 169834226

Centisome position: 1.47

GC content: 35.36

Gene sequence:

>543_bases
ATGAATATTGTTGAACCGTTACGAGATAAGGATGATATCCAAGCCATGAAGGACTATCTATCATCTTGGAATGAAAAGTA
TTACATGTTATTTCTTTTGGGAATCAATACAGGTTTTCGTGTCGGAGATATTCTCAAACTAAAGGTTAAAGATGTTCAAG
GTTGGCATATTAAAGTTAGGGAACAGAAAACAGGGAAATACAAGAGCATTAAAATGACAAGGCCACTCAAGAATGAATTG
AGGGAATTTGTCAAAGATAAAGAATTACATGAGTATCTATTTCAGAGTCGTGTCGGAAAGAATAAGGCGCTCAGCTATAA
GACGGTATACTGGTTTCTTAAAAGAGCTGCTGAAGACTTAGGAATCGATAATGTCGGAACTCACACGATGCGAAAAACAT
TTGGCTATCATTACTACAAGAAGTACAAGAACGTTGCAGACTTGATGTCATTATTCAATCATTCAAGTCCAGCAGTTACA
CTAATTTATATTTGTGTAAGGCAAGATGAACTTGATACTAAGATGAGTAATTTTAGCCTCTAA

Upstream 100 bases:

>100_bases
AAAAAAGTATAGCATTGACAAAAAGAATATGATAGATTGATACTATCCAAAGCACTGAGAAAATCTTAGTGCTTTATTTT
TTTGTGAAAGGAGTAAAACT

Downstream 100 bases:

>100_bases
TATTTTTTTGATTTTTTCAACTATCCATAACGAGGAGGTTTCTAGTTTATATTTTGAAGAGGGCCTGAAGCGTTGTCCGT
GCTAGTTTTTTAGTATGAAA

Product: prophage LambdaSa2, site-specific recombinase phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MNIVEPLRDKDDIQAMKDYLSSWNEKYYMLFLLGINTGFRVGDILKLKVKDVQGWHIKVREQKTGKYKSIKMTRPLKNEL
REFVKDKELHEYLFQSRVGKNKALSYKTVYWFLKRAAEDLGIDNVGTHTMRKTFGYHYYKKYKNVADLMSLFNHSSPAVT
LIYICVRQDELDTKMSNFSL

Sequences:

>Translated_180_residues
MNIVEPLRDKDDIQAMKDYLSSWNEKYYMLFLLGINTGFRVGDILKLKVKDVQGWHIKVREQKTGKYKSIKMTRPLKNEL
REFVKDKELHEYLFQSRVGKNKALSYKTVYWFLKRAAEDLGIDNVGTHTMRKTFGYHYYKKYKNVADLMSLFNHSSPAVT
LIYICVRQDELDTKMSNFSL
>Mature_180_residues
MNIVEPLRDKDDIQAMKDYLSSWNEKYYMLFLLGINTGFRVGDILKLKVKDVQGWHIKVREQKTGKYKSIKMTRPLKNEL
REFVKDKELHEYLFQSRVGKNKALSYKTVYWFLKRAAEDLGIDNVGTHTMRKTFGYHYYKKYKNVADLMSLFNHSSPAVT
LIYICVRQDELDTKMSNFSL

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21354; Mature: 21354

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIVEPLRDKDDIQAMKDYLSSWNEKYYMLFLLGINTGFRVGDILKLKVKDVQGWHIKVR
CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEE
EQKTGKYKSIKMTRPLKNELREFVKDKELHEYLFQSRVGKNKALSYKTVYWFLKRAAEDL
ECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GIDNVGTHTMRKTFGYHYYKKYKNVADLMSLFNHSSPAVTLIYICVRQDELDTKMSNFSL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCCCC
>Mature Secondary Structure
MNIVEPLRDKDDIQAMKDYLSSWNEKYYMLFLLGINTGFRVGDILKLKVKDVQGWHIKVR
CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEE
EQKTGKYKSIKMTRPLKNELREFVKDKELHEYLFQSRVGKNKALSYKTVYWFLKRAAEDL
ECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GIDNVGTHTMRKTFGYHYYKKYKNVADLMSLFNHSSPAVTLIYICVRQDELDTKMSNFSL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]