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The map label for this gene is rbcR [H]

Identifier: 169825053

GI number: 169825053

Start: 1492139

End: 1493038

Strand: Direct

Name: rbcR [H]

Synonym: FMG_1356

Alternate gene names: 169825053

Gene position: 1492139-1493038 (Clockwise)

Preceding gene: 169825047

Following gene: 169825061

Centisome position: 83.01

GC content: 31.89

Gene sequence:

>900_bases
ATGGATTTAAAACAATTAGAAACATTCATCACGGTTGTGGAATGGGATAGTTTTTCTGAGGCAGCTAAAAGGCTATATCT
TACACAACCTACGATTAGTACTCATATAAAACAAATTGAAAACGAATTGAATACAGAATTGTTGAAAAGAACAACGAAAA
AGTTGGAGCTTACACCAGAAGGCAGAGAATTTTATAATTATGCTAAGTCGATTTCTAGAATTATGGAAAGTATGCAGGAT
TCTTTTTCAAAAAAAAGCCTTACTACTTTTAATATCGGAGCAAGTTCTGTTCCTGCAACCTATATTCTACCCTCTCTTTT
ATCAAAATATCACAAATCTCACATTAAAACTTTGGTGAATATAATTCAATCAGATAGTTTAACTACGATTGATGGCGTTA
TAAATGGTTCTATAAATATTGGAATTGTCGGCATGACTACTATGGATAAGGAGCTTACTTTCGAAAAAGTTCTCAGTGAT
AAGCTTGTAATTGTCACGCCTTATAACGATTATTACAATGCATTGAAGAAAAACAACGTGAAGATTAGTTCTATTTTAAA
AGAGCCGATAATTTTTCGTGAACAAGGTTCTGGTACATTAAAAGAATCTATGAAAATGATTGATGCTTTGGGTATTAGCA
AGAATTCTCTGAATTTAATAGGAACTGCAAATAGCACCGAAACTTTGAAGCAATGCATAAGAAGTGGAATGGGAATATCA
ATTATGAGTAAGCTTTCTGTAGAAGAGGAAGTCGCAAATAATCAATTGATTTCTTTCAAGATCGACGATTTTGAATCGGT
ACGTCACTTTTATCTTGTGTATCGTTCCAACACATTATTGTCAGAACCTGTAATAGATTTTGTAAAGTTTGCAAAAAAAT
ACTTAGAAGAAAATTTTTAG

Upstream 100 bases:

>100_bases
TTTACAATTGGGTATATTACTATAAAGTATTTGTGTATTTTGTAAAATAAAAGGTATATGATAAAATATATATATTAAAT
ACCACGAAAGAGATAATAAA

Downstream 100 bases:

>100_bases
TTCATAAAAATAACCGCAATAGCTATATTAGCAATTGCGGTTTTTGTGTGTTTGTTTGGTTAATTTAGACTAATTAAATT
ATATCAAAGTATAGCGAACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDLKQLETFITVVEWDSFSEAAKRLYLTQPTISTHIKQIENELNTELLKRTTKKLELTPEGREFYNYAKSISRIMESMQD
SFSKKSLTTFNIGASSVPATYILPSLLSKYHKSHIKTLVNIIQSDSLTTIDGVINGSINIGIVGMTTMDKELTFEKVLSD
KLVIVTPYNDYYNALKKNNVKISSILKEPIIFREQGSGTLKESMKMIDALGISKNSLNLIGTANSTETLKQCIRSGMGIS
IMSKLSVEEEVANNQLISFKIDDFESVRHFYLVYRSNTLLSEPVIDFVKFAKKYLEENF

Sequences:

>Translated_299_residues
MDLKQLETFITVVEWDSFSEAAKRLYLTQPTISTHIKQIENELNTELLKRTTKKLELTPEGREFYNYAKSISRIMESMQD
SFSKKSLTTFNIGASSVPATYILPSLLSKYHKSHIKTLVNIIQSDSLTTIDGVINGSINIGIVGMTTMDKELTFEKVLSD
KLVIVTPYNDYYNALKKNNVKISSILKEPIIFREQGSGTLKESMKMIDALGISKNSLNLIGTANSTETLKQCIRSGMGIS
IMSKLSVEEEVANNQLISFKIDDFESVRHFYLVYRSNTLLSEPVIDFVKFAKKYLEENF
>Mature_299_residues
MDLKQLETFITVVEWDSFSEAAKRLYLTQPTISTHIKQIENELNTELLKRTTKKLELTPEGREFYNYAKSISRIMESMQD
SFSKKSLTTFNIGASSVPATYILPSLLSKYHKSHIKTLVNIIQSDSLTTIDGVINGSINIGIVGMTTMDKELTFEKVLSD
KLVIVTPYNDYYNALKKNNVKISSILKEPIIFREQGSGTLKESMKMIDALGISKNSLNLIGTANSTETLKQCIRSGMGIS
IMSKLSVEEEVANNQLISFKIDDFESVRHFYLVYRSNTLLSEPVIDFVKFAKKYLEENF

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=23.7931034482759, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082132, Length=264, Percent_Identity=24.2424242424242, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790399, Length=283, Percent_Identity=23.321554770318, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787806, Length=291, Percent_Identity=22.680412371134, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=27.1523178807947, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081904, Length=217, Percent_Identity=24.8847926267281, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=23.728813559322, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787601, Length=167, Percent_Identity=25.748502994012, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787530, Length=305, Percent_Identity=21.9672131147541, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789639, Length=126, Percent_Identity=32.5396825396825, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=255, Percent_Identity=21.1764705882353, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788887, Length=171, Percent_Identity=23.9766081871345, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=275, Percent_Identity=20, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693105, Length=171, Percent_Identity=23.9766081871345, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI145693193, Length=72, Percent_Identity=41.6666666666667, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=257, Percent_Identity=21.011673151751, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33878; Mature: 33878

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKQLETFITVVEWDSFSEAAKRLYLTQPTISTHIKQIENELNTELLKRTTKKLELTPE
CCHHHHHHHHHHHCCCCHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
GREFYNYAKSISRIMESMQDSFSKKSLTTFNIGASSVPATYILPSLLSKYHKSHIKTLVN
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IIQSDSLTTIDGVINGSINIGIVGMTTMDKELTFEKVLSDKLVIVTPYNDYYNALKKNNV
HHHCCCCEEEHHEEECCEEEEEEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCC
KISSILKEPIIFREQGSGTLKESMKMIDALGISKNSLNLIGTANSTETLKQCIRSGMGIS
HHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCH
IMSKLSVEEEVANNQLISFKIDDFESVRHFYLVYRSNTLLSEPVIDFVKFAKKYLEENF
HHHHHHHHHHHCCCCEEEEECCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLKQLETFITVVEWDSFSEAAKRLYLTQPTISTHIKQIENELNTELLKRTTKKLELTPE
CCHHHHHHHHHHHCCCCHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
GREFYNYAKSISRIMESMQDSFSKKSLTTFNIGASSVPATYILPSLLSKYHKSHIKTLVN
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IIQSDSLTTIDGVINGSINIGIVGMTTMDKELTFEKVLSDKLVIVTPYNDYYNALKKNNV
HHHCCCCEEEHHEEECCEEEEEEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCC
KISSILKEPIIFREQGSGTLKESMKMIDALGISKNSLNLIGTANSTETLKQCIRSGMGIS
HHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCH
IMSKLSVEEEVANNQLISFKIDDFESVRHFYLVYRSNTLLSEPVIDFVKFAKKYLEENF
HHHHHHHHHHHCCCCEEEEECCCHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]