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The map label for this gene is yhcF [H]

Identifier: 169824974

GI number: 169824974

Start: 1390093

End: 1390449

Strand: Direct

Name: yhcF [H]

Synonym: FMG_1277

Alternate gene names: 169824974

Gene position: 1390093-1390449 (Clockwise)

Preceding gene: 169824973

Following gene: 169824975

Centisome position: 77.33

GC content: 32.49

Gene sequence:

>357_bases
ATGCAATTTGATGATAATAAGCCTATCTACATTCAAATCGTAGATTATTTTAAATACAAAATAATTAGGCAAGAATTAAA
GTCTTCTGATAAAATTCCTTCTGTCAGAGAAACTGCGAAAGAATTAAACGTAAATCCTAATACTGTTCAACGTGCTTATG
CAGAGTTGGAAAGCTGTGGAGTTACTATGAGTAAACGAGGACTTGGTTCGTTTGTAGATGTGGACGATGATAAATTAAAA
GCTTTGAAAAATGACATGGCAGAACAATTGATCGATGATTTCTTAAACGAAATGTATCAGATGAATATGCCGAAAGAAAA
GCTAATGGAACTAATAGATGAAAGGTGGACAAAATGA

Upstream 100 bases:

>100_bases
CGATTTATCATCAAAGGGCGTAAATATTTTATTAAAATAGGTTGACTTTTTTATTGTAACGGTGTATTATTGTTATAGAA
CAGATGAGAAAGGAGATAAT

Downstream 100 bases:

>100_bases
GCGTACTCGAAATAAAAAATTTGTCGAAAAAATACGGCAACAAACAAGCACTTAATGATGTATCATTTACAGCCGAAAAA
GGAGAAGTGATTGGACTTCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MQFDDNKPIYIQIVDYFKYKIIRQELKSSDKIPSVRETAKELNVNPNTVQRAYAELESCGVTMSKRGLGSFVDVDDDKLK
ALKNDMAEQLIDDFLNEMYQMNMPKEKLMELIDERWTK

Sequences:

>Translated_118_residues
MQFDDNKPIYIQIVDYFKYKIIRQELKSSDKIPSVRETAKELNVNPNTVQRAYAELESCGVTMSKRGLGSFVDVDDDKLK
ALKNDMAEQLIDDFLNEMYQMNMPKEKLMELIDERWTK
>Mature_118_residues
MQFDDNKPIYIQIVDYFKYKIIRQELKSSDKIPSVRETAKELNVNPNTVQRAYAELESCGVTMSKRGLGSFVDVDDDKLK
ALKNDMAEQLIDDFLNEMYQMNMPKEKLMELIDERWTK

Specific function: May Be A Regulatory Protein For The Lct Genes. [C]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 13890; Mature: 13890

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFDDNKPIYIQIVDYFKYKIIRQELKSSDKIPSVRETAKELNVNPNTVQRAYAELESCG
CCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
VTMSKRGLGSFVDVDDDKLKALKNDMAEQLIDDFLNEMYQMNMPKEKLMELIDERWTK
CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MQFDDNKPIYIQIVDYFKYKIIRQELKSSDKIPSVRETAKELNVNPNTVQRAYAELESCG
CCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
VTMSKRGLGSFVDVDDDKLKALKNDMAEQLIDDFLNEMYQMNMPKEKLMELIDERWTK
CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]