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The map label for this gene is ykgD [C]

Identifier: 169824677

GI number: 169824677

Start: 1062760

End: 1063731

Strand: Direct

Name: ykgD [C]

Synonym: FMG_0980

Alternate gene names: 169824677

Gene position: 1062760-1063731 (Clockwise)

Preceding gene: 169824640

Following gene: 169824703

Centisome position: 59.12

GC content: 29.63

Gene sequence:

>972_bases
ATGGATAGAACAGTTATTGATTATTTAACAAACTTAGTACATGACGCTCCTTTTATTCCTGTTCCAACTTTATCAACTGA
AAACAAACAAATCTTTCAAATAGATCCCCATTTTGGCAAAGGTACTTTTCGCATACTAAAATTTGACAGCCGTTTAATTC
TAATTTTAATTGCTAACTTTACTCCAAATGAAACAATGGAGAAAATAACCGAAGTATCTGAAAAGTATTTAGAGATTAGC
CAATTTGAAACAGAAAGCAGTTCATTTAAAGTCGGTGGCAGAAAGTTAAATAATGTAGAAAAAGGTATATATTGTTACTT
AAATACAGAAAAGAAAACTTATACCTATTGTGAGGCAAATAAGCCTGTAAAGTTTACGAAAATAATCCTAACCAAAGAAT
ACTTTGATACTTTCTTAAAATTAAAATATGATGATTTTGAATATGAAAAAGCAAAGATTCTTAATTCTTATTTGTTAAAA
ACTCAAAATTCTCCGCAGTTGAATTTTATATTTCAACAGATAAGAGAATCCCAAGCTGAAGGAAAGATTTTGCCTTTATA
TTTGGAAAGCAAAGTTATGGAACTATTATCTATCATAATTACAGAGTTAGAAGAAAAGGAAAAAAATATATCCGTTGTCT
TAACTAAAAAAGATAAGCAAAATCTGAAAAGGACTGTATCAGCTATGAAAAAAGATTTATCGGTTCATATTGACGGACTT
GAACTCTCTAAAATTGCTTTAATGAGTCCTGCACGATTTCAATTAGCTTTTCGCAAATACTACGGTGTTCCTCCCTACGA
GTACTTAAAAGAACTAAGGCTTAATAAGGCATTATTATTGCTGAAAAATCCTGAGTATAAAATATCTACGATAGCAGAAA
AAGTTGGCTATACACACACAGGACATTTTGCTAAAATATTCAAATCAACTTATGGTATCACACCAAGTAAATATAGAAGT
ATGCTTAACTAA

Upstream 100 bases:

>100_bases
CTTTATTTATAAGCTTTTTATCAGTATTTCTATTTACATTTTTATAAATTTGTGATATAATAAAATAAATTTGTGATATT
AAAAGAGGTGAGTAGAATTG

Downstream 100 bases:

>100_bases
AGAAATTTATCCCAATATTATAAAACATAAATTTAGAGCGTGTAATTTTTACACGCTCTCTTTAAATGATTCCTTGTTTT
TATAATCCTTCATCAGTATA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MDRTVIDYLTNLVHDAPFIPVPTLSTENKQIFQIDPHFGKGTFRILKFDSRLILILIANFTPNETMEKITEVSEKYLEIS
QFETESSSFKVGGRKLNNVEKGIYCYLNTEKKTYTYCEANKPVKFTKIILTKEYFDTFLKLKYDDFEYEKAKILNSYLLK
TQNSPQLNFIFQQIRESQAEGKILPLYLESKVMELLSIIITELEEKEKNISVVLTKKDKQNLKRTVSAMKKDLSVHIDGL
ELSKIALMSPARFQLAFRKYYGVPPYEYLKELRLNKALLLLKNPEYKISTIAEKVGYTHTGHFAKIFKSTYGITPSKYRS
MLN

Sequences:

>Translated_323_residues
MDRTVIDYLTNLVHDAPFIPVPTLSTENKQIFQIDPHFGKGTFRILKFDSRLILILIANFTPNETMEKITEVSEKYLEIS
QFETESSSFKVGGRKLNNVEKGIYCYLNTEKKTYTYCEANKPVKFTKIILTKEYFDTFLKLKYDDFEYEKAKILNSYLLK
TQNSPQLNFIFQQIRESQAEGKILPLYLESKVMELLSIIITELEEKEKNISVVLTKKDKQNLKRTVSAMKKDLSVHIDGL
ELSKIALMSPARFQLAFRKYYGVPPYEYLKELRLNKALLLLKNPEYKISTIAEKVGYTHTGHFAKIFKSTYGITPSKYRS
MLN
>Mature_323_residues
MDRTVIDYLTNLVHDAPFIPVPTLSTENKQIFQIDPHFGKGTFRILKFDSRLILILIANFTPNETMEKITEVSEKYLEIS
QFETESSSFKVGGRKLNNVEKGIYCYLNTEKKTYTYCEANKPVKFTKIILTKEYFDTFLKLKYDDFEYEKAKILNSYLLK
TQNSPQLNFIFQQIRESQAEGKILPLYLESKVMELLSIIITELEEKEKNISVVLTKKDKQNLKRTVSAMKKDLSVHIDGL
ELSKIALMSPARFQLAFRKYYGVPPYEYLKELRLNKALLLLKNPEYKISTIAEKVGYTHTGHFAKIFKSTYGITPSKYRS
MLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37608; Mature: 37608

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRTVIDYLTNLVHDAPFIPVPTLSTENKQIFQIDPHFGKGTFRILKFDSRLILILIANF
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECC
TPNETMEKITEVSEKYLEISQFETESSSFKVGGRKLNNVEKGIYCYLNTEKKTYTYCEAN
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHCCCCCCEEEEEECCCCEEEEECCC
KPVKFTKIILTKEYFDTFLKLKYDDFEYEKAKILNSYLLKTQNSPQLNFIFQQIRESQAE
CCEEEEEEEEEHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
GKILPLYLESKVMELLSIIITELEEKEKNISVVLTKKDKQNLKRTVSAMKKDLSVHIDGL
CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEECCE
ELSKIALMSPARFQLAFRKYYGVPPYEYLKELRLNKALLLLKNPEYKISTIAEKVGYTHT
EECHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCC
GHFAKIFKSTYGITPSKYRSMLN
CHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure
MDRTVIDYLTNLVHDAPFIPVPTLSTENKQIFQIDPHFGKGTFRILKFDSRLILILIANF
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECC
TPNETMEKITEVSEKYLEISQFETESSSFKVGGRKLNNVEKGIYCYLNTEKKTYTYCEAN
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHCCCCCCEEEEEECCCCEEEEECCC
KPVKFTKIILTKEYFDTFLKLKYDDFEYEKAKILNSYLLKTQNSPQLNFIFQQIRESQAE
CCEEEEEEEEEHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
GKILPLYLESKVMELLSIIITELEEKEKNISVVLTKKDKQNLKRTVSAMKKDLSVHIDGL
CCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEECCE
ELSKIALMSPARFQLAFRKYYGVPPYEYLKELRLNKALLLLKNPEYKISTIAEKVGYTHT
EECHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCC
GHFAKIFKSTYGITPSKYRSMLN
CHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]