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The map label for this gene is yggS [C]

Identifier: 169824333

GI number: 169824333

Start: 701340

End: 702020

Strand: Direct

Name: yggS [C]

Synonym: FMG_0636

Alternate gene names: 169824333

Gene position: 701340-702020 (Clockwise)

Preceding gene: 169824332

Following gene: 169824334

Centisome position: 39.02

GC content: 28.78

Gene sequence:

>681_bases
ATGAGTATAAAAGATAATCTAAATGAAGTTAATGAAAATTTGAAAAAATTTGCATCTCATGGAGAAACTCCAAAACTTAT
TGCGGTTACAAAAACTGTTGATATTGATAGAATTAAAGAAGCAATTGATTGCGGAGTAACAGATATTGGAGAAAATAAGC
CCCAAGAAATGAGTTGGAAATATGATGAATTAAAAGATTCTGTAAATTATCATATGATTGGTCATTTGCAATCTAATAAA
GTTAAAGATGTTGTAGGAAAAGCTTGTTTGATTCATTCATTAGATAGAATGAGTGTTTTAAAAGAAATTGAGAAGAGAGC
AAGTGCTATTAATAAACCACAAGATTGTTTGATTCAATTAAATGTTGCAGAGGAAGAGCAAAAATCTGGTTTATATCTTG
ATGATTTGGATTCTTTTATAGAAGAAATTGAAAAAAGAAAGTTTGTCAAAGTAAAAGGTTTGATGAGCATTGCTCCGTTT
GCTGAAGATCCAGAAGAAATAAGATGGGTTTTTAAGAAAATGAGAGAAATTTATGATAAAATAAAAAATACAGAATACAA
AAATATAGAAATGAAATACTTATCTATGGGAATGAGCCACGACTACAAAGTGGCACTTGAAGAAGGATCAAATATGGTAA
GAGTGGGAAGCTTTATTTTTGGTAAAAGAAATTACAATTAG

Upstream 100 bases:

>100_bases
GACAAATCGATGTTAATAACAGAAAAGTAAAAACTCTGGAACTTTACGATTATATCGTAAAAAATCCAAGGTTTGTTAAA
GAGGGGGAACTTTTAAAATA

Downstream 100 bases:

>100_bases
GAGGACATTATGTCATTTATGAATTCATTTAAAAAATTAGTAGGAGTAGAAGACGATTACGACGAATATTACGATGACCA
ATACTACTATGATGAATCAG

Product: putative proline synthetase associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSIKDNLNEVNENLKKFASHGETPKLIAVTKTVDIDRIKEAIDCGVTDIGENKPQEMSWKYDELKDSVNYHMIGHLQSNK
VKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQDCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPF
AEDPEEIRWVFKKMREIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNYN

Sequences:

>Translated_226_residues
MSIKDNLNEVNENLKKFASHGETPKLIAVTKTVDIDRIKEAIDCGVTDIGENKPQEMSWKYDELKDSVNYHMIGHLQSNK
VKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQDCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPF
AEDPEEIRWVFKKMREIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNYN
>Mature_225_residues
SIKDNLNEVNENLKKFASHGETPKLIAVTKTVDIDRIKEAIDCGVTDIGENKPQEMSWKYDELKDSVNYHMIGHLQSNKV
KDVVGKACLIHSLDRMSVLKEIEKRASAINKPQDCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPFA
EDPEEIRWVFKKMREIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNYN

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=217, Percent_Identity=31.7972350230415, Blast_Score=91, Evalue=6e-19,
Organism=Escherichia coli, GI1789321, Length=234, Percent_Identity=34.1880341880342, Blast_Score=122, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17533025, Length=221, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=227, Percent_Identity=34.3612334801762, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45550861, Length=218, Percent_Identity=32.1100917431193, Blast_Score=94, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26103; Mature: 25972

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKDNLNEVNENLKKFASHGETPKLIAVTKTVDIDRIKEAIDCGVTDIGENKPQEMSWK
CCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHCCCC
YDELKDSVNYHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQDCLIQL
HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEE
NVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPFAEDPEEIRWVFKKMREIYDK
ECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
IKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNYN
HCCCCCCCEEHHHHHHCCCCCEEEEECCCCCEEEEHHHHHCCCCCC
>Mature Secondary Structure 
SIKDNLNEVNENLKKFASHGETPKLIAVTKTVDIDRIKEAIDCGVTDIGENKPQEMSWK
CCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHCCCC
YDELKDSVNYHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQDCLIQL
HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEE
NVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPFAEDPEEIRWVFKKMREIYDK
ECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
IKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNYN
HCCCCCCCEEHHHHHHCCCCCEEEEECCCCCEEEEHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]