| Definition | Finegoldia magna ATCC 29328 chromosome, complete genome. |
|---|---|
| Accession | NC_010376 |
| Length | 1,797,577 |
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The map label for this gene is lytC [H]
Identifier: 169823780
GI number: 169823780
Start: 104140
End: 106512
Strand: Direct
Name: lytC [H]
Synonym: FMG_0083
Alternate gene names: 169823780
Gene position: 104140-106512 (Clockwise)
Preceding gene: 169823779
Following gene: 169823781
Centisome position: 5.79
GC content: 31.98
Gene sequence:
>2373_bases ATGAACACGAAATTATTGAAAAAAGTCTTGGCATCGACGCTTGCACTTTCCATGATACTACCAATTGGAGTTGTAAATGC CGATAAACAAAACACGCAACAAAAAGAAAAATCACAACAGACTACAAGAATATCAGGCAAAGATAGAATCACAACGTCTG TAGAAATATCCAAATCAGCATATACTACATCAGAAAATGTCGTACTTGCAAGTGGATTCAACTTTGCAGATGCATTATCA GCAGGACAACTTGCATCAGCACTAGACGCACCACTTTTATTGTCATCACAAGATAAACTTGACTCACAAACAAAAAACGA AATCGAACGTTTGAAAGCGAAGAAAGTTTTTGTTGTAGGTGGAGATAATGCAATCAGCAAAACTGGAATTGACACAACAT TAAAATCAGAAAAGATTGACGTAACAAGACTTGAAGGACAAGACAGATACTCAACATCCCAAAAAGTCATGGAAAAAACA AAAGAAATCATCAACCCAGAATATTTGTTGATAGCAAGTGGCAAGAACTTCCCAGACGCACTAGCAGCGACAGGATTTTT TGTAAACCACAAATCAGTAATGGTTTTAAGCGATGGATTAACATATCCACAATCAAACCTACAAGAAATCGCAATCGGTG GGAAAAACCAACTACCACTAAAAGGCTTCAAAGGAAAAAGAGTTTCCGGAAAAGACAGATATGAAACAGCACTTGAAATC GCAAAACTTTCATTTGACAAGAACAACAACGCAATCCTTGCAAGCGGTCAAGTTTTCGCAGATAGCTTGTCAGCAGTAAG CTTGACGAAAAAACACAACGCACCAATCATATTGACACAATCAAATAGCTTGACAGAAAACGCCAAGAAATATTTGAATG GCAAGAATGTGTTCATAGTTGGTGGGGAAAAAACTGTTGTGAACAAAATAATGACGAATATCACAGCAGAAGAAAGAGCG AAAATAGCTTCATTTAACCTTGAAGAAGAAATAGAAAAAGTATTAGCTAAAAAGAAAAATAATGACAATATCAATTTGGA AAAAGAAATCGAAAGAATCTTAGCCAAAAACCAAGCTTATCAAAATTTGATTATCAAACAAGAAGTCGAAAAAGCTCTAT CAGGAAAACAAATCGGTCAATCAGTCGACTTGGAAAAAGAAATTGAAAAAATATTGGATAAGAAACAATCTAACCAAAAT ATCGACTTGGAAAAAGAGATAAATAGAGTTATAACAAAAAGACGATTAAAGGATTCGATTGATGGTGGCGAAAAAACAAT AGCTAATGCAAAGAAAAAAATAGTACAATATAATGATGAATTAAAAAAATACAAAGAAAACCCAAATTATATAAAAAAAC AAGAACTTAAGCTAAAAAAAATGCAAGAGGAAACAGAACAATACGAAGAGAGATATAAATCAGAGAAGGCTGATGCTATA AAGAAATTAGAAGAAGTTAATAAGAATATTTCATTATTAGATTACAGACTTAAGGAAGGTGCGTTCGCATTTTTCAAATG GGCTGGAGAAAAATATCCAGAATATAAGCAAGATGCTGATAAAGCATTGTCAATACTTAATGAATATTATAAAAAAGGTG ATGTTAAGAAAACATCTGGAGATGCTACAAGCTATGAGAATTTATTGGCTAGTTTTGATTTATACAATCAACTTAACAAG GTTAAAAGAGATTTTAATTATCACGATGTTGATACAAATTTAACCATTATGGCAAAAGCCATGGTAAGCTGTAACAGAAA TGTTTATTCTTCAAATAAAAATACATTTAGCATTACTGAAGATTTATATTCGGGAGAGAAAAATCCTATAGAATATTGGT ATAATGATGGAAAAGCAGTACTGGATGAATTAAAAAAAATAGAGGGAAAGTATTATAACTATCCAGAATATATCGCGAAA GATCTAGCTAGAAAAGAATATAAAAGGATACATGGAAAAGAATCTGTTATTGGTATTCTTGTAGAACTTTTATATAGCGA TGATAATTTTATAGCTATTGCAAGAAATACATCAAAAAATAGCTCCTATAATACATTCTGTCTTAATGCAGAAAGTGATG AAGTAAGTGAAAAACCGAAATCGAAACATGAGAAACATGATTGGAATTTTGATAAATACAAGAGAGTAACCGATGAATAT TATTTATTACACGATAAAGAAGATGCAGAAAATTGGATTAAGAGGGTTGAGTCAGACAAGAAAGAAAGAGAAAAAGAGAT GGAAGACTTAAAGAACCATGAAGACTATGAAACTCATAGAATTAGAGAATTAATTAAAATAACTGAAGATGACATAGCTC GCTGGGAAAAAGAAATTCAAAAAGACAAGCAAACTTACGAAAAACTAAAATAA
Upstream 100 bases:
>100_bases TCCAACAACAGAAATCAGAGGATATGTCGAAGAAGCTTTAAAAGAAGAAGGCTACGGAAAAGTGCTAGAAGCATACAAAA ATATTTAACAAGAGGCAAAA
Downstream 100 bases:
>100_bases CACAAGGGGTGCAGAGGAATCTGCACTCTTTTTTATTGAACGAATTTATCTGAAAAATCTCAAATTGGGTATAATAGTAT TGAAGGCAAAATAATGGGAG
Product: N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: Cell wall hydrolase; Cell wall-associated polypeptide CWBP49; CWBP49; Major autolysin [H]
Number of amino acids: Translated: 790; Mature: 790
Protein sequence:
>790_residues MNTKLLKKVLASTLALSMILPIGVVNADKQNTQQKEKSQQTTRISGKDRITTSVEISKSAYTTSENVVLASGFNFADALS AGQLASALDAPLLLSSQDKLDSQTKNEIERLKAKKVFVVGGDNAISKTGIDTTLKSEKIDVTRLEGQDRYSTSQKVMEKT KEIINPEYLLIASGKNFPDALAATGFFVNHKSVMVLSDGLTYPQSNLQEIAIGGKNQLPLKGFKGKRVSGKDRYETALEI AKLSFDKNNNAILASGQVFADSLSAVSLTKKHNAPIILTQSNSLTENAKKYLNGKNVFIVGGEKTVVNKIMTNITAEERA KIASFNLEEEIEKVLAKKKNNDNINLEKEIERILAKNQAYQNLIIKQEVEKALSGKQIGQSVDLEKEIEKILDKKQSNQN IDLEKEINRVITKRRLKDSIDGGEKTIANAKKKIVQYNDELKKYKENPNYIKKQELKLKKMQEETEQYEERYKSEKADAI KKLEEVNKNISLLDYRLKEGAFAFFKWAGEKYPEYKQDADKALSILNEYYKKGDVKKTSGDATSYENLLASFDLYNQLNK VKRDFNYHDVDTNLTIMAKAMVSCNRNVYSSNKNTFSITEDLYSGEKNPIEYWYNDGKAVLDELKKIEGKYYNYPEYIAK DLARKEYKRIHGKESVIGILVELLYSDDNFIAIARNTSKNSSYNTFCLNAESDEVSEKPKSKHEKHDWNFDKYKRVTDEY YLLHDKEDAENWIKRVESDKKEREKEMEDLKNHEDYETHRIRELIKITEDDIARWEKEIQKDKQTYEKLK
Sequences:
>Translated_790_residues MNTKLLKKVLASTLALSMILPIGVVNADKQNTQQKEKSQQTTRISGKDRITTSVEISKSAYTTSENVVLASGFNFADALS AGQLASALDAPLLLSSQDKLDSQTKNEIERLKAKKVFVVGGDNAISKTGIDTTLKSEKIDVTRLEGQDRYSTSQKVMEKT KEIINPEYLLIASGKNFPDALAATGFFVNHKSVMVLSDGLTYPQSNLQEIAIGGKNQLPLKGFKGKRVSGKDRYETALEI AKLSFDKNNNAILASGQVFADSLSAVSLTKKHNAPIILTQSNSLTENAKKYLNGKNVFIVGGEKTVVNKIMTNITAEERA KIASFNLEEEIEKVLAKKKNNDNINLEKEIERILAKNQAYQNLIIKQEVEKALSGKQIGQSVDLEKEIEKILDKKQSNQN IDLEKEINRVITKRRLKDSIDGGEKTIANAKKKIVQYNDELKKYKENPNYIKKQELKLKKMQEETEQYEERYKSEKADAI KKLEEVNKNISLLDYRLKEGAFAFFKWAGEKYPEYKQDADKALSILNEYYKKGDVKKTSGDATSYENLLASFDLYNQLNK VKRDFNYHDVDTNLTIMAKAMVSCNRNVYSSNKNTFSITEDLYSGEKNPIEYWYNDGKAVLDELKKIEGKYYNYPEYIAK DLARKEYKRIHGKESVIGILVELLYSDDNFIAIARNTSKNSSYNTFCLNAESDEVSEKPKSKHEKHDWNFDKYKRVTDEY YLLHDKEDAENWIKRVESDKKEREKEMEDLKNHEDYETHRIRELIKITEDDIARWEKEIQKDKQTYEKLK >Mature_790_residues MNTKLLKKVLASTLALSMILPIGVVNADKQNTQQKEKSQQTTRISGKDRITTSVEISKSAYTTSENVVLASGFNFADALS AGQLASALDAPLLLSSQDKLDSQTKNEIERLKAKKVFVVGGDNAISKTGIDTTLKSEKIDVTRLEGQDRYSTSQKVMEKT KEIINPEYLLIASGKNFPDALAATGFFVNHKSVMVLSDGLTYPQSNLQEIAIGGKNQLPLKGFKGKRVSGKDRYETALEI AKLSFDKNNNAILASGQVFADSLSAVSLTKKHNAPIILTQSNSLTENAKKYLNGKNVFIVGGEKTVVNKIMTNITAEERA KIASFNLEEEIEKVLAKKKNNDNINLEKEIERILAKNQAYQNLIIKQEVEKALSGKQIGQSVDLEKEIEKILDKKQSNQN IDLEKEINRVITKRRLKDSIDGGEKTIANAKKKIVQYNDELKKYKENPNYIKKQELKLKKMQEETEQYEERYKSEKADAI KKLEEVNKNISLLDYRLKEGAFAFFKWAGEKYPEYKQDADKALSILNEYYKKGDVKKTSGDATSYENLLASFDLYNQLNK VKRDFNYHDVDTNLTIMAKAMVSCNRNVYSSNKNTFSITEDLYSGEKNPIEYWYNDGKAVLDELKKIEGKYYNYPEYIAK DLARKEYKRIHGKESVIGILVELLYSDDNFIAIARNTSKNSSYNTFCLNAESDEVSEKPKSKHEKHDWNFDKYKRVTDEY YLLHDKEDAENWIKRVESDKKEREKEMEDLKNHEDYETHRIRELIKITEDDIARWEKEIQKDKQTYEKLK
Specific function: Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella - in particular of its basal body - and sporulation. Has a high affinity for teich
COG id: COG2247
COG function: function code M; Putative cell wall-binding domain
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007253 - InterPro: IPR002508 [H]
Pfam domain/function: PF01520 Amidase_3; PF04122 CW_binding_2 [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 90394; Mature: 90394
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTKLLKKVLASTLALSMILPIGVVNADKQNTQQKEKSQQTTRISGKDRITTSVEISKSA CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHH YTTSENVVLASGFNFADALSAGQLASALDAPLLLSSQDKLDSQTKNEIERLKAKKVFVVG CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCEEEEEE GDNAISKTGIDTTLKSEKIDVTRLEGQDRYSTSQKVMEKTKEIINPEYLLIASGKNFPDA CCCCCCCCCCCCHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH LAATGFFVNHKSVMVLSDGLTYPQSNLQEIAIGGKNQLPLKGFKGKRVSGKDRYETALEI HHHCCEEEECCEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AKLSFDKNNNAILASGQVFADSLSAVSLTKKHNAPIILTQSNSLTENAKKYLNGKNVFIV HHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCEEEEE GGEKTVVNKIMTNITAEERAKIASFNLEEEIEKVLAKKKNNDNINLEKEIERILAKNQAY CCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH QNLIIKQEVEKALSGKQIGQSVDLEKEIEKILDKKQSNQNIDLEKEINRVITKRRLKDSI HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC DGGEKTIANAKKKIVQYNDELKKYKENPNYIKKQELKLKKMQEETEQYEERYKSEKADAI CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKLEEVNKNISLLDYRLKEGAFAFFKWAGEKYPEYKQDADKALSILNEYYKKGDVKKTSG HHHHHHCCCCCHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC DATSYENLLASFDLYNQLNKVKRDFNYHDVDTNLTIMAKAMVSCNRNVYSSNKNTFSITE CCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEH DLYSGEKNPIEYWYNDGKAVLDELKKIEGKYYNYPEYIAKDLARKEYKRIHGKESVIGIL HHHCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH VELLYSDDNFIAIARNTSKNSSYNTFCLNAESDEVSEKPKSKHEKHDWNFDKYKRVTDEY HHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHCCCHHHCCCCCCCHHHHHHHCCCE YLLHDKEDAENWIKRVESDKKEREKEMEDLKNHEDYETHRIRELIKITEDDIARWEKEIQ EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHH KDKQTYEKLK HHHHHHHHCC >Mature Secondary Structure MNTKLLKKVLASTLALSMILPIGVVNADKQNTQQKEKSQQTTRISGKDRITTSVEISKSA CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHH YTTSENVVLASGFNFADALSAGQLASALDAPLLLSSQDKLDSQTKNEIERLKAKKVFVVG CCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCEEEEEE GDNAISKTGIDTTLKSEKIDVTRLEGQDRYSTSQKVMEKTKEIINPEYLLIASGKNFPDA CCCCCCCCCCCCHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH LAATGFFVNHKSVMVLSDGLTYPQSNLQEIAIGGKNQLPLKGFKGKRVSGKDRYETALEI HHHCCEEEECCEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AKLSFDKNNNAILASGQVFADSLSAVSLTKKHNAPIILTQSNSLTENAKKYLNGKNVFIV HHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCEEEEE GGEKTVVNKIMTNITAEERAKIASFNLEEEIEKVLAKKKNNDNINLEKEIERILAKNQAY CCCHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH QNLIIKQEVEKALSGKQIGQSVDLEKEIEKILDKKQSNQNIDLEKEINRVITKRRLKDSI HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC DGGEKTIANAKKKIVQYNDELKKYKENPNYIKKQELKLKKMQEETEQYEERYKSEKADAI CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKLEEVNKNISLLDYRLKEGAFAFFKWAGEKYPEYKQDADKALSILNEYYKKGDVKKTSG HHHHHHCCCCCHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC DATSYENLLASFDLYNQLNKVKRDFNYHDVDTNLTIMAKAMVSCNRNVYSSNKNTFSITE CCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEH DLYSGEKNPIEYWYNDGKAVLDELKKIEGKYYNYPEYIAKDLARKEYKRIHGKESVIGIL HHHCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH VELLYSDDNFIAIARNTSKNSSYNTFCLNAESDEVSEKPKSKHEKHDWNFDKYKRVTDEY HHHHHCCCCEEEEEECCCCCCCCCEEEECCCCHHHHCCCHHHCCCCCCCHHHHHHHCCCE YLLHDKEDAENWIKRVESDKKEREKEMEDLKNHEDYETHRIRELIKITEDDIARWEKEIQ EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHH KDKQTYEKLK HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1357079; 1682302; 9384377 [H]