| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is aroK [H]
Identifier: 167625987
GI number: 167625987
Start: 4967537
End: 4968052
Strand: Reverse
Name: aroK [H]
Synonym: Shal_4082
Alternate gene names: 167625987
Gene position: 4968052-4967537 (Counterclockwise)
Preceding gene: 167625988
Following gene: 167625986
Centisome position: 95.05
GC content: 45.74
Gene sequence:
>516_bases ATGGCCGAAAAACGTAATATTTTCCTAGTAGGCCCTATGGGGGCCGGTAAAAGCACTATAGGCCGTCATCTGGCACAGAT GCTGCACTTAGAGTTCCACGATTCAGATCAAGAAATTGAAAGCCGTACAGGCGCTGATATCGCTTGGGTTTTTGATGTTG AAGGTGAAGAGGGTTTCCGCAACCGTGAAACACAGGTTGTCGCTGATCTAACCGAAAAGCAAGGTATTGTCTTAGCAACG GGCGGTGGTTCGATTCAAAGCAAAGAGATCCGTAATAATCTTTCTGCACGCGGCATCGTTGTCTATCTAGAAACAACTAT CGATAAGCAAGTCGCTCGTACGCAAAGAGACAAGCGTCGTCCATTGCTGCAGGTCGATGACCCAAGAGAAGTGCTAGAGA ACCTAGCCGAGGTGCGTAATCCTCTTTATGAAGAGATTGCAGACGTCATTGTTAAGACTGACGAGCAAAGTGCCAAAGTT GTTGCAAACCAAATTATTGAACAGTTAGGTTTTTAA
Upstream 100 bases:
>100_bases AGCGGTCAAGTCTCAATAGAGCAAGGTAAGATTAAAGGTCAACTCCGTTTATTTGAGTTGACGTAGGCAAACTTAAATAA GATTCAGACGTATAAATCAA
Downstream 100 bases:
>100_bases TATATGACTAAACAAGTTCTGGTAGAGCTCGGAGAGCGCAGTTACCCAATTGAAATTGGCCAGAATTTGTTTAGTAATAG CGAGCCTTTGGCTCGCTATC
Product: shikimate kinase I
Products: NA
Alternate protein names: SK [H]
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MAEKRNIFLVGPMGAGKSTIGRHLAQMLHLEFHDSDQEIESRTGADIAWVFDVEGEEGFRNRETQVVADLTEKQGIVLAT GGGSIQSKEIRNNLSARGIVVYLETTIDKQVARTQRDKRRPLLQVDDPREVLENLAEVRNPLYEEIADVIVKTDEQSAKV VANQIIEQLGF
Sequences:
>Translated_171_residues MAEKRNIFLVGPMGAGKSTIGRHLAQMLHLEFHDSDQEIESRTGADIAWVFDVEGEEGFRNRETQVVADLTEKQGIVLAT GGGSIQSKEIRNNLSARGIVVYLETTIDKQVARTQRDKRRPLLQVDDPREVLENLAEVRNPLYEEIADVIVKTDEQSAKV VANQIIEQLGF >Mature_170_residues AEKRNIFLVGPMGAGKSTIGRHLAQMLHLEFHDSDQEIESRTGADIAWVFDVEGEEGFRNRETQVVADLTEKQGIVLATG GGSIQSKEIRNNLSARGIVVYLETTIDKQVARTQRDKRRPLLQVDDPREVLENLAEVRNPLYEEIADVIVKTDEQSAKVV ANQIIEQLGF
Specific function: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate [H]
COG id: COG0703
COG function: function code E; Shikimate kinase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate kinase family [H]
Homologues:
Organism=Escherichia coli, GI87082255, Length=170, Percent_Identity=78.2352941176471, Blast_Score=274, Evalue=2e-75, Organism=Escherichia coli, GI1786587, Length=159, Percent_Identity=34.5911949685535, Blast_Score=90, Evalue=1e-19,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000623 - InterPro: IPR023000 [H]
Pfam domain/function: PF01202 SKI [H]
EC number: =2.7.1.71 [H]
Molecular weight: Translated: 19141; Mature: 19010
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS01128 SHIKIMATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEKRNIFLVGPMGAGKSTIGRHLAQMLHLEFHDSDQEIESRTGADIAWVFDVEGEEGFR CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCCCC NRETQVVADLTEKQGIVLATGGGSIQSKEIRNNLSARGIVVYLETTIDKQVARTQRDKRR CCHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHCC PLLQVDDPREVLENLAEVRNPLYEEIADVIVKTDEQSAKVVANQIIEQLGF CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure AEKRNIFLVGPMGAGKSTIGRHLAQMLHLEFHDSDQEIESRTGADIAWVFDVEGEEGFR CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCCCC NRETQVVADLTEKQGIVLATGGGSIQSKEIRNNLSARGIVVYLETTIDKQVARTQRDKRR CCHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHCC PLLQVDDPREVLENLAEVRNPLYEEIADVIVKTDEQSAKVVANQIIEQLGF CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA