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The map label for this gene is frdC [H]

Identifier: 167625804

GI number: 167625804

Start: 4732890

End: 4733594

Strand: Reverse

Name: frdC [H]

Synonym: Shal_3899

Alternate gene names: 167625804

Gene position: 4733594-4732890 (Counterclockwise)

Preceding gene: 167625809

Following gene: 167625803

Centisome position: 90.56

GC content: 44.96

Gene sequence:

>705_bases
ATGTTAGCATCCTACGTAAGCGGTACCGGACATCCTGCATCGGCAAAAGCAGATAAAATACAAAGCATTACAGGAGTGAT
GATGGGCTGCTTCCTACTGGCTCACCTGCACTTCGAATCGAGTATCCTACTCGGAAAAGATGCTTTTTATACGGTCGTGC
AATTTTTAGAAGGTGGTATGTTTAGCCCAACAGGTCACGGTTTTCCGATTGTGACTAAAGTCTTCTCGGTGTTTATGTTA
GCCGTAGTGATGCTGCATGCTGCCGTTGCTTTACGTCGTTTTCCCGCTCAGCTTGGCCAATGGCGTGCGTTAAGACGTCA
TATGACAGTGATTAATCACAAAGATAGTCATGCTTGGTTTTGGCAATTATCGACCGGTTTTGTACTGTTCTTTTTAGTGC
CTGTTCACCTTTTTACCATGATCGCCAACCCTGAAATTGGTCCAAATCTATCGGCTGAGCGTGTTTATCATCAAAATGCT
TGGTTGTTATACGTACTATTGCTACCCGCTGTAGTTATTCACGCCATGATTGGTCTTTACCGCGCTGCGGTTAAGTGGGG
CTTCACCCATAAGCGCACAGGTCTGCGTAAATTGGCTAAGGTGCTGATCATTTATCTTATTGTTATCGGTTTGCTTAGCC
TGGGTTCTTACATTTTGATCGGTAGTGAGCTCACTCTCCCTGTAGAGGCTTATCGACCAAGTTAA

Upstream 100 bases:

>100_bases
GACACTGATCACGAAAGAAATCCCTGTATCATTTTGCTGACATAGATCTTGTTAGAGTGTAAATCCCACTATTAGGCATA
AGACAAACAAGACAAGAATA

Downstream 100 bases:

>100_bases
GCGCTGCCTATTAGTGGGGGAGCAAACTGAATTCGTTGATTAATCTTCACTTACCTAATCGAATTTTTGTTGATCTATCT
CACGGTTAAATACCTATTAT

Product: fumarate reductase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLASYVSGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGMFSPTGHGFPIVTKVFSVFML
AVVMLHAAVALRRFPAQLGQWRALRRHMTVINHKDSHAWFWQLSTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNA
WLLYVLLLPAVVIHAMIGLYRAAVKWGFTHKRTGLRKLAKVLIIYLIVIGLLSLGSYILIGSELTLPVEAYRPS

Sequences:

>Translated_234_residues
MLASYVSGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGMFSPTGHGFPIVTKVFSVFML
AVVMLHAAVALRRFPAQLGQWRALRRHMTVINHKDSHAWFWQLSTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNA
WLLYVLLLPAVVIHAMIGLYRAAVKWGFTHKRTGLRKLAKVLIIYLIVIGLLSLGSYILIGSELTLPVEAYRPS
>Mature_234_residues
MLASYVSGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGMFSPTGHGFPIVTKVFSVFML
AVVMLHAAVALRRFPAQLGQWRALRRHMTVINHKDSHAWFWQLSTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNA
WLLYVLLLPAVVIHAMIGLYRAAVKWGFTHKRTGLRKLAKVLIIYLIVIGLLSLGSYILIGSELTLPVEAYRPS

Specific function: Di-heme cytochrome of the fumarate reductase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004224
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 26045; Mature: 26045

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASYVSGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGM
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCC
FSPTGHGFPIVTKVFSVFMLAVVMLHAAVALRRFPAQLGQWRALRRHMTVINHKDSHAWF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
WQLSTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNAWLLYVLLLPAVVIHAMIGLY
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RAAVKWGFTHKRTGLRKLAKVLIIYLIVIGLLSLGSYILIGSELTLPVEAYRPS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHCCCCC
>Mature Secondary Structure
MLASYVSGTGHPASAKADKIQSITGVMMGCFLLAHLHFESSILLGKDAFYTVVQFLEGGM
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCC
FSPTGHGFPIVTKVFSVFMLAVVMLHAAVALRRFPAQLGQWRALRRHMTVINHKDSHAWF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
WQLSTGFVLFFLVPVHLFTMIANPEIGPNLSAERVYHQNAWLLYVLLLPAVVIHAMIGLY
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
RAAVKWGFTHKRTGLRKLAKVLIIYLIVIGLLSLGSYILIGSELTLPVEAYRPS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]