| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625760
Identifier: 167625760
GI number: 167625760
Start: 4676676
End: 4677332
Strand: Reverse
Name: 167625760
Synonym: Shal_3855
Alternate gene names: NA
Gene position: 4677332-4676676 (Counterclockwise)
Preceding gene: 167625761
Following gene: 167625759
Centisome position: 89.49
GC content: 42.47
Gene sequence:
>657_bases ATGAAGCAGCAGTGGAATAAGTTAGCCGAAAAATTTGACGCCTTAAGTCAGCGTGAAAGAGTCTTGGTTGCAGCCGCAGC GCTGATCGTTGCTGGTTTACTGTTTTATCTACCGCTCGAGTCGGCTTTGAAGCAGCACGGTAAACTCAATGAGCAGATCC GAGTTGTTGAAAGTGAAAATAGGATCTCTGAACAGCAAATACAGCTTTATGAGGACAGTCTTCGAAAAGATCCTGATGAA GATTATCGTCAGCGTTTAAATAATATTAACCAGCAGAATAAATCGATTGATGAACAGCTCTCTTATCAGATGGTGGATAT GGTGCCAGCTGATCATATGCCGACCCTGCTGGCTGGTCTGCTTTCTAAGATAAAAGGGATCAAGCTGAAATCCTTTACTT CAATTGCGCCAACTCCGTTATTGGAGGTCGGTGAAGATAAGAAGGTTAATCTATATAGCCACGGTATCCGTCTCGAATTT GTCGGTGATTACTTTGCGGTAATGCGGTTTGTGGAAGCCGTCGAAAATATGCCAAATAAGCTTTACTGGCGCAGTATGGA CTATCAAGTTGATACATACCCTAAGGCCACGGTTTCATTAGAGCTTTATACCTTGAGTATTAATAAGGACTTTATCAGTG TTGCCAAAAAAGACTAG
Upstream 100 bases:
>100_bases GTCATGCTTTTGCAACTATGACGATGAATCTCGGTGAAAACCAGCCGCTTGCCTTTAAGTTGACAAGCGATGCGACTCCT ACCGGTAAGGAGTTGATTAA
Downstream 100 bases:
>100_bases TGCGCTATTGATTGCTTTCTTGTGCAGTACTTTAGGTTTTAACCTTAACGCTGCAACGCTAAGAGATCCGACGAGGCCTG GTAATTTTTCAGGAAATACC
Product: MSHA biogenesis protein MshJ
Products: NA
Alternate protein names: Glucose-6-Phosphate Isomerase; Msha Biogenesis Protein Mshj; MshA Biogenesis Protein MshJ-Like Protein; MshA Biogenesis Protein MshJ-Like; Type IV Pilus Mannose-Sensitive Hemagglutinin D
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESENRISEQQIQLYEDSLRKDPDE DYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGLLSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEF VGDYFAVMRFVEAVENMPNKLYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD
Sequences:
>Translated_218_residues MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESENRISEQQIQLYEDSLRKDPDE DYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGLLSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEF VGDYFAVMRFVEAVENMPNKLYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD >Mature_218_residues MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESENRISEQQIQLYEDSLRKDPDE DYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGLLSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEF VGDYFAVMRFVEAVENMPNKLYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25132; Mature: 25132
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESEN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCC RISEQQIQLYEDSLRKDPDEDYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEFVGDYFAVMRFVEAVENMPNK HHHHCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHCCCHH LYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD HEEECCCCEECCCCCEEEEEEEEEEEECHHHHHHHCCC >Mature Secondary Structure MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESEN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCC RISEQQIQLYEDSLRKDPDEDYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH LSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEFVGDYFAVMRFVEAVENMPNK HHHHCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHCCCHH LYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD HEEECCCCEECCCCCEEEEEEEEEEEECHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA