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The map label for this gene is tapC [H]

Identifier: 167625754

GI number: 167625754

Start: 4669525

End: 4670745

Strand: Reverse

Name: tapC [H]

Synonym: Shal_3849

Alternate gene names: 167625754

Gene position: 4670745-4669525 (Counterclockwise)

Preceding gene: 167625755

Following gene: 167625753

Centisome position: 89.36

GC content: 48.08

Gene sequence:

>1221_bases
ATGCCTACATATCAGTACCGCGGTCGAAGCGCTCAAGGCGAGCAGATAAAGGGGCAAGTCGATGCGAGCTCAGAGAGCGC
GGCTGCCGATCAACTGATGTCGCGAGGGGTGATCCCGCTAGAGCTTGTATTAGCCAAGGAGGTGAAAGAGTTCAGCCTTA
AGGCCCTGTTCAAAGGTAAGGTCGCATTAGAGGAGTTACAGATTTTTACACGGCAGATGTACTCGCTTACTCGATCTGGT
ATTCCAATTTTAAGAGCGATAGCCGGTCTTTCTGAGACCACACATTCGGTACGCATGAAAGAAGCGCTCGATGATATTTC
AGCTCAACTGACCTCTGGTCGCCCCCTCTCATCGGCGATGAATCAGCATCCTGATGTATTTGATGCTCTTTTTGTCTCTA
TGGTTCATGTGGGAGAGAACACAGGTAAGCTTGAAGATGCGTTTATTCAGTTATCAGGCTATATCGAACGTGAGCAGGAA
ACCCGTAGGCGAATTAAAGCCGCGATGCGCTATCCGATTTTTGTTTTGATCGCGATCGCTATTGCCATGGTGATCCTCAA
TATTATGGTGATCCCCAAGTTTGCTGAGATGTTTTCCCGTTTTGGCGCCGATCTGCCCTGGGCGACTAAAATCCTCATTA
ATACGTCGAATCTTTTTGTTAATTACTGGCCTGCGATGATAATTGCGCTTATCGGCACTTTTGTCGGCATTCGTTATTGG
CATAGCACCGAGAAAGGCGAGAAACAGTGGGACAAGTGGAAGTTAAACATTCCCGTAGTCGGTAGCATCATCGAGCGCTC
AACTCTGTCTCGCTATTGCCGCAGTTTTTCAATGATGTTGAGCGCCGGCGTACCCATGACCCAAGCGCTGAGCCTCGTCG
CTGACGCAGTCGATAATGCCTATATGCACGACCGTATTGTGGGTATGCGTCGTGGTATCGAGTCGGGCGAGTCGATGTTA
AGGGTATCGAATAACTGTCAACTGTTTACCCCTCTCGTACTGCAGATGGTGGCAGTCGGTGAAGAGACGGGGCAAATCGA
TCAATTACTCAATGATGCCGCCGATTTCTATGAGGGTGAAGTTGACTATGATCTTAAAAACTTAACGGCTAAGTTAGAAC
CGATTTTGATTGGTTTTGTTGCCTGTATTGTTTTGGTACTCGCACTCGGTATTTACCTGCCTATGTGGGATATGCTCAAT
GTGGTTAAGGGCGGCAATTAA

Upstream 100 bases:

>100_bases
CCCTGAAATATTTAGCGCAGGGCATGACGACCATCGAAGAGGTCGCCAAGTTGGTTGAAGATGTCAGCGATAATTCATTA
GATTTGGGTGAGGCTTAGGC

Downstream 100 bases:

>100_bases
TGAAGAGTGTGGAACATTAACGTGCGGAGTCAACAAAAATCCGACGCAGAATTGATTACCATTTATGGCAAAATGATCGC
ACTGATAATATTGCTATTTG

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MPTYQYRGRSAQGEQIKGQVDASSESAAADQLMSRGVIPLELVLAKEVKEFSLKALFKGKVALEELQIFTRQMYSLTRSG
IPILRAIAGLSETTHSVRMKEALDDISAQLTSGRPLSSAMNQHPDVFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQE
TRRRIKAAMRYPIFVLIAIAIAMVILNIMVIPKFAEMFSRFGADLPWATKILINTSNLFVNYWPAMIIALIGTFVGIRYW
HSTEKGEKQWDKWKLNIPVVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDRIVGMRRGIESGESML
RVSNNCQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVACIVLVLALGIYLPMWDMLN
VVKGGN

Sequences:

>Translated_406_residues
MPTYQYRGRSAQGEQIKGQVDASSESAAADQLMSRGVIPLELVLAKEVKEFSLKALFKGKVALEELQIFTRQMYSLTRSG
IPILRAIAGLSETTHSVRMKEALDDISAQLTSGRPLSSAMNQHPDVFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQE
TRRRIKAAMRYPIFVLIAIAIAMVILNIMVIPKFAEMFSRFGADLPWATKILINTSNLFVNYWPAMIIALIGTFVGIRYW
HSTEKGEKQWDKWKLNIPVVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDRIVGMRRGIESGESML
RVSNNCQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVACIVLVLALGIYLPMWDMLN
VVKGGN
>Mature_405_residues
PTYQYRGRSAQGEQIKGQVDASSESAAADQLMSRGVIPLELVLAKEVKEFSLKALFKGKVALEELQIFTRQMYSLTRSGI
PILRAIAGLSETTHSVRMKEALDDISAQLTSGRPLSSAMNQHPDVFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQET
RRRIKAAMRYPIFVLIAIAIAMVILNIMVIPKFAEMFSRFGADLPWATKILINTSNLFVNYWPAMIIALIGTFVGIRYWH
STEKGEKQWDKWKLNIPVVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNAYMHDRIVGMRRGIESGESMLR
VSNNCQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGEVDYDLKNLTAKLEPILIGFVACIVLVLALGIYLPMWDMLNV
VKGGN

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=396, Percent_Identity=26.2626262626263, Blast_Score=181, Evalue=9e-47,
Organism=Escherichia coli, GI1786295, Length=407, Percent_Identity=25.0614250614251, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 45262; Mature: 45131

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTYQYRGRSAQGEQIKGQVDASSESAAADQLMSRGVIPLELVLAKEVKEFSLKALFKGK
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VALEELQIFTRQMYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISAQLTSGRPLSSAM
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
NQHPDVFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIAIA
HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAMVILNIMVIPKFAEMFSRFGADLPWATKILINTSNLFVNYWPAMIIALIGTFVGIRYW
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
HSTEKGEKQWDKWKLNIPVVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNA
CCCCCCHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YMHDRIVGMRRGIESGESMLRVSNNCQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGE
HHHHHHHHHHHCHHCCHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
VDYDLKNLTAKLEPILIGFVACIVLVLALGIYLPMWDMLNVVKGGN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PTYQYRGRSAQGEQIKGQVDASSESAAADQLMSRGVIPLELVLAKEVKEFSLKALFKGK
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VALEELQIFTRQMYSLTRSGIPILRAIAGLSETTHSVRMKEALDDISAQLTSGRPLSSAM
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
NQHPDVFDALFVSMVHVGENTGKLEDAFIQLSGYIEREQETRRRIKAAMRYPIFVLIAIA
HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAMVILNIMVIPKFAEMFSRFGADLPWATKILINTSNLFVNYWPAMIIALIGTFVGIRYW
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
HSTEKGEKQWDKWKLNIPVVGSIIERSTLSRYCRSFSMMLSAGVPMTQALSLVADAVDNA
CCCCCCHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
YMHDRIVGMRRGIESGESMLRVSNNCQLFTPLVLQMVAVGEETGQIDQLLNDAADFYEGE
HHHHHHHHHHHCHHCCHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
VDYDLKNLTAKLEPILIGFVACIVLVLALGIYLPMWDMLNVVKGGN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]