| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625752
Identifier: 167625752
GI number: 167625752
Start: 4668324
End: 4668932
Strand: Reverse
Name: 167625752
Synonym: Shal_3847
Alternate gene names: NA
Gene position: 4668932-4668324 (Counterclockwise)
Preceding gene: 167625753
Following gene: 167625751
Centisome position: 89.32
GC content: 45.98
Gene sequence:
>609_bases ATGAAACAACAGTATCAAAAGGGCTTCTCCCTTATCGAATTAGTCATAGTCATCGTGATCTTAGGCTTGTTAGCTGCGAC GGCTATACCACGTTTTTTAAACGTAACTGATGATGCTGAAGATGCCAGTGTAGACGGCGTAGCCGGTGGCTTGAGCACTG CGGTGAGCTTTGTTCGCTCACAATGGGAAGTCGACGGTCGTCGTAATAATTCAGTTCTGTTGGACGGTACTAATGTATCG CTGGATACTCGTTTTGGTTATCCGACGGGTCTTAGCAATACCGATGCTAAAGGCATGGACCAAAATTCTTGCCAGGAAGT ATTTGATCTTGTTTTACAAAATGCACCACGAAGCGTAGTTTCAGGAGTCGACGCGCGTAAAGCAAGATATGTAGTGAGCG TGGCAAAAGGAGCGGGTGGTAGCTCAAACACTATAGATGGCGAGCTTGTTAGCGGTCTTGATGTTTGTTTGTATTACCTC GCCTCATCACTGGTGTTGAATTCACAAACGGGCATACCGACAGAGGATTTAACGGACTTAAATAATTTGGCGGGCAAAGG GGTGACTTATAACCCAGGCTCAGGCCAAGTGGCGAGTTTTATTGACTAA
Upstream 100 bases:
>100_bases TTTTTGACAGAGGCCCGTTAGGCGCCTAAAAAGAGTGAAATTATCTGTTTTCTAATTTTAACAAACTGCTAGAATAGCCA TATACAAAACTGGGGGTAAA
Downstream 100 bases:
>100_bases ACTAACTTAACTACTATTTAGTAGCTCTTAGTGAAGACGTTAATAGCAAAAGTTAATAGTTTACAGCTGACAGGTATTAG CCGTCCGCTGTATTTGATAT
Product: methylation site containing protein
Products: NA
Alternate protein names: Methylation Site Containing Protein; Pilin Protein; Prepilin-Type Cleavage/Methylation; Msha Pilin Protein Mshb; Methylation
Number of amino acids: Translated: 202; Mature: 202
Protein sequence:
>202_residues MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRSQWEVDGRRNNSVLLDGTNVS LDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVVSGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYL ASSLVLNSQTGIPTEDLTDLNNLAGKGVTYNPGSGQVASFID
Sequences:
>Translated_202_residues MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRSQWEVDGRRNNSVLLDGTNVS LDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVVSGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYL ASSLVLNSQTGIPTEDLTDLNNLAGKGVTYNPGSGQVASFID >Mature_202_residues MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRSQWEVDGRRNNSVLLDGTNVS LDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVVSGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYL ASSLVLNSQTGIPTEDLTDLNNLAGKGVTYNPGSGQVASFID
Specific function: Unknown
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21242; Mature: 21242
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH QWEVDGRRNNSVLLDGTNVSLDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVV HHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH SGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYLASSLVLNSQTGIPTEDLTDL CCCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH NNLAGKGVTYNPGSGQVASFID HHHCCCCCEECCCCCCHHCCCC >Mature Secondary Structure MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH QWEVDGRRNNSVLLDGTNVSLDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVV HHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH SGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYLASSLVLNSQTGIPTEDLTDL CCCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH NNLAGKGVTYNPGSGQVASFID HHHCCCCCEECCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA