Click here to switch to the map view.

The map label for this gene is rng [H]

Identifier: 167625740

GI number: 167625740

Start: 4655069

End: 4656577

Strand: Reverse

Name: rng [H]

Synonym: Shal_3835

Alternate gene names: 167625740

Gene position: 4656577-4655069 (Counterclockwise)

Preceding gene: 167625741

Following gene: 167625739

Centisome position: 89.09

GC content: 46.45

Gene sequence:

>1509_bases
GTGAGTAGAAGTCGATTCGCGCAGAACAGAGTGCAGAAAAAAATAGGCTCTGAACTCTTAATTAATGTAACACCTACAGA
AGCTCGAGTAGCATTAGTTGAGCATGGGGTGTTGCAGGAAGTCCATATTGAGCGCCGCATGAAGCGGGGCTTGGTTGGTA
ATATTTATAAAGGCAAGGTTAGCCGTGTACTACCCGGTATGCAGGCCGCTTTTGTTGATATCGGCCTCGATAAGGCGGCA
TTTTTGCACGCTTCAGATATTGTGCCACATACCGAATGTGTAGCCGATGTTGAAAAAGGCAACTTTGTCGTGCGTGATAT
CGCCGAGCTTGTTAGGCAAGGGCAAGACATCATGGTGCAAGTGGTTAAAGACCCATTAGGCACTAAAGGCGCGCGTTTAA
CTACAGATATCACTCTGCCATCTCGTTACTTGGTTTTCATGCCTGGCTCTAGTCACGTTGGCGTATCGCAGCGTATTGAG
TCGGAAGAAGTACGGGCCCGCTTGAAAAAAATTACTCAGCCATTTGTCGATGATGATGGCGGTTTTATTATTCGCACCGC
AGCAGAAAGTGCCGGTGAAGATGAGCTAGTGCAAGATGCCGGATTCTTAAGGCGCGTCTGGGCTAAAGTCAGTGAACGTC
GTAAGCGTCGTGGCGTGTCTTTGTTATATCAAGATCTCGCCTTGCCTGTGCGTATCGTGCGTGACTTTGTGGGTACAGAG
CTGGACCAAATTCAGGTCGACTCCGCCCAAACCTATGAAGAGCTACAGCAGTTTGCGCAAGAGTTCATGCCGGAGATCGC
CGATAAGCTAGATCACTACAATGGACCGATCCCGATTTTCGATCTATATGATGTCGAGAATGAAGTGCAGCGCGCACTTG
GGCGTAAAGTTGAGCTTAAATCTGGCGGCTACCTGATCATTGATCAAACTGAAGCCATGACCACAGTCGATATCAATACT
GGCGCATTTGTTGGTCATCGTAATCTTGCTGAAACGATTTTTAATACCAACCTCGAAGCGACTCATGCGATCGCAAGGCA
ATTACGTCTGCGTAATTTAGGCGGAATTATCATTATCGACTTTATCGATATGATGAACAATGAGCATAAGAAGCGGGTGC
TAGCCAGTCTAGAAAGCGCTCTATCTAAAGACAGAGTGAAAACCAATATCAGTGGTTTCTCTGGTTTAGGCTTAGTGGAG
ATGACTCGTAAACGTACTCGTGAGAGTTTAGAGCACGTGCTGTGTGGTGAATGCCCTGCATGTCTCGGTACGGGGAATTT
AAAGACGGTAGAAACGGTTTCTTATGAGATCTTTAGAGAGATCATTCGCTTGAATCGTGGTTACGATGCCGATGAGTTCT
TGGTGTACTGTTCACCCAATGTGTATCAAAGCCTGAAAGGTGATGAGAGTCATCTACTAGGAGAGTTGGAAGTCTATATC
GGTAAACGAGTTAGGCTGCAAAACGAACCTATGTACGCGCAGAACAAATTTGATGTGGTGATAATGTAG

Upstream 100 bases:

>100_bases
AGACTTTAGCTCGCTAACCGGTATTTAATCCCCGCTTAGCGAGATCACAATCTACGCCAAATCCTTTTTAAATTAGCTAT
TTCCCTAAGTGGGGTGAGTT

Downstream 100 bases:

>100_bases
TGCCGCTTGAGACCTGTGCGCCTAAAAAGCGCTCTTTTAATTTGACGCGTTTTTGTTGGCAATTTCTGGCCATCATTTTA
GTGTTATTTGCATTGATGGT

Product: ribonuclease G

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MSRSRFAQNRVQKKIGSELLINVTPTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGLDKAA
FLHASDIVPHTECVADVEKGNFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRIE
SEEVRARLKKITQPFVDDDGGFIIRTAAESAGEDELVQDAGFLRRVWAKVSERRKRRGVSLLYQDLALPVRIVRDFVGTE
LDQIQVDSAQTYEELQQFAQEFMPEIADKLDHYNGPIPIFDLYDVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINT
GAFVGHRNLAETIFNTNLEATHAIARQLRLRNLGGIIIIDFIDMMNNEHKKRVLASLESALSKDRVKTNISGFSGLGLVE
MTRKRTRESLEHVLCGECPACLGTGNLKTVETVSYEIFREIIRLNRGYDADEFLVYCSPNVYQSLKGDESHLLGELEVYI
GKRVRLQNEPMYAQNKFDVVIM

Sequences:

>Translated_502_residues
MSRSRFAQNRVQKKIGSELLINVTPTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGLDKAA
FLHASDIVPHTECVADVEKGNFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRIE
SEEVRARLKKITQPFVDDDGGFIIRTAAESAGEDELVQDAGFLRRVWAKVSERRKRRGVSLLYQDLALPVRIVRDFVGTE
LDQIQVDSAQTYEELQQFAQEFMPEIADKLDHYNGPIPIFDLYDVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINT
GAFVGHRNLAETIFNTNLEATHAIARQLRLRNLGGIIIIDFIDMMNNEHKKRVLASLESALSKDRVKTNISGFSGLGLVE
MTRKRTRESLEHVLCGECPACLGTGNLKTVETVSYEIFREIIRLNRGYDADEFLVYCSPNVYQSLKGDESHLLGELEVYI
GKRVRLQNEPMYAQNKFDVVIM
>Mature_501_residues
SRSRFAQNRVQKKIGSELLINVTPTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKVSRVLPGMQAAFVDIGLDKAAF
LHASDIVPHTECVADVEKGNFVVRDIAELVRQGQDIMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRIES
EEVRARLKKITQPFVDDDGGFIIRTAAESAGEDELVQDAGFLRRVWAKVSERRKRRGVSLLYQDLALPVRIVRDFVGTEL
DQIQVDSAQTYEELQQFAQEFMPEIADKLDHYNGPIPIFDLYDVENEVQRALGRKVELKSGGYLIIDQTEAMTTVDINTG
AFVGHRNLAETIFNTNLEATHAIARQLRLRNLGGIIIIDFIDMMNNEHKKRVLASLESALSKDRVKTNISGFSGLGLVEM
TRKRTRESLEHVLCGECPACLGTGNLKTVETVSYEIFREIIRLNRGYDADEFLVYCSPNVYQSLKGDESHLLGELEVYIG
KRVRLQNEPMYAQNKFDVVIM

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=489, Percent_Identity=71.9836400817996, Blast_Score=714, Evalue=0.0,
Organism=Escherichia coli, GI1787325, Length=429, Percent_Identity=37.7622377622378, Blast_Score=266, Evalue=3e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 56462; Mature: 56330

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSRFAQNRVQKKIGSELLINVTPTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKV
CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVADVEKGNFVVRDIAELVRQGQDIMVQ
HHHCCCHHHHHHCCCCCHHHHEEHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH
VVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEVRARLKKITQPFVDDDG
HHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCC
GFIIRTAAESAGEDELVQDAGFLRRVWAKVSERRKRRGVSLLYQDLALPVRIVRDFVGTE
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
LDQIQVDSAQTYEELQQFAQEFMPEIADKLDHYNGPIPIFDLYDVENEVQRALGRKVELK
HHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCEEEEC
SGGYLIIDQTEAMTTVDINTGAFVGHRNLAETIFNTNLEATHAIARQLRLRNLGGIIIID
CCCEEEEECCCCEEEEECCCCCEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEE
FIDMMNNEHKKRVLASLESALSKDRVKTNISGFSGLGLVEMTRKRTRESLEHVLCGECPA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
CLGTGNLKTVETVSYEIFREIIRLNRGYDADEFLVYCSPNVYQSLKGDESHLLGELEVYI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHH
GKRVRLQNEPMYAQNKFDVVIM
CCEEEECCCCCCCCCCCCEEEC
>Mature Secondary Structure 
SRSRFAQNRVQKKIGSELLINVTPTEARVALVEHGVLQEVHIERRMKRGLVGNIYKGKV
CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVADVEKGNFVVRDIAELVRQGQDIMVQ
HHHCCCHHHHHHCCCCCHHHHEEHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH
VVKDPLGTKGARLTTDITLPSRYLVFMPGSSHVGVSQRIESEEVRARLKKITQPFVDDDG
HHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCC
GFIIRTAAESAGEDELVQDAGFLRRVWAKVSERRKRRGVSLLYQDLALPVRIVRDFVGTE
CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
LDQIQVDSAQTYEELQQFAQEFMPEIADKLDHYNGPIPIFDLYDVENEVQRALGRKVELK
HHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHCCEEEEC
SGGYLIIDQTEAMTTVDINTGAFVGHRNLAETIFNTNLEATHAIARQLRLRNLGGIIIID
CCCEEEEECCCCEEEEECCCCCEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEE
FIDMMNNEHKKRVLASLESALSKDRVKTNISGFSGLGLVEMTRKRTRESLEHVLCGECPA
HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
CLGTGNLKTVETVSYEIFREIIRLNRGYDADEFLVYCSPNVYQSLKGDESHLLGELEVYI
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHH
GKRVRLQNEPMYAQNKFDVVIM
CCEEEECCCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]