| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fhs
Identifier: 167625711
GI number: 167625711
Start: 4621473
End: 4623185
Strand: Reverse
Name: fhs
Synonym: Shal_3806
Alternate gene names: 167625711
Gene position: 4623185-4621473 (Counterclockwise)
Preceding gene: 167625712
Following gene: 167625709
Centisome position: 88.45
GC content: 47.81
Gene sequence:
>1713_bases ATGCAGTCAGATATTGAAATTTCGCGCCAACATACTTGTTTACCTATCACCGAAATCGCAAAAGATCTCGGACTGAATCC AGATGAGTTTTCTCCTTGTGGTGTTAACAAGGCTAAAGTCTCACAGTCAGTCGCTAGAAGATTAGCCGATAAAAAAAATG CCAAGTTAGTGATTGTAACTGCCGTTACTCCGACGCCTTTTGGTGAAGGTAAAACCGTGACCACCATTGGCCTAACTCAA GCCATGAACCTCAATGGTATTAAAACTTGCGCCTGTATTCGTCAGCCGAGCATGGGACCTGTATTTGGCACCAAAGGTGG CGCTGCGGGCGGTGGCTACGCGCAAGTCGTACCGATGGAAGAGCTTAATCTGCACCTGACCGGTGATATTCATGCGGTGA GTAGTGCTCATAACTTAGCGGCCGCCGCAATCGATGCTCGTCTATTCCATGAACATCGTTTGGGAGCTGAAGTCTTTGCT CAAGAGTCAGGCTTAAGTGCGCTCAATATCGATTCTGAGAATATCCTCTGGCGTCGAGTGGTCGACCATAACGAGCGTAG CCTAAGACAGATTAAAGTCGGGTATGGCAAAGTTAACGGTCCGGTTCATGAATCAGGGTTCGATATTACTGCGGCGTCAG AGCTGATGGCTATCTTGGCGCTAAGCCAAGATCTGAAGGATCTAAGGCAGCGTATTGGCCGCTTGGTGTTGGCACTTAAT ACCCAAGGTGAGCCGATTACCGCTGAAGAGTTAGGCGTTGCAGGGGCAATGACGGTAATTATGGCCGATGCGATTGAGCC AACCTTGATGCAAACCTTATCTGGTGACCCTTGTTTCATTCATGCAGGGCCATTTGCCAATATCGCTCATGGCAACTCCT CTATTATTGCCGACACCATTGCAGCAAAGCTAGCCGATGTAGTTATCACTGAGGCGGGCTTTGGCTCCGATATGGGCTTT GAAAAGTTTAGTAATATCAAGGTGAGAGAGTCGGGCTATGCGCCCAGTGCATCTGTGGTTGTCGTGACGCTTAAGGCACT TAAAGCTAACAGTGGCATCGAGTCTGACAAAGATATTAATCAGCCTGATATGGAGCGTCTACAAGCAGGTTTTGCCAACC TAGAGTGGCATATCAACAACGTAAGCCAATATGGTGTACCTGTTGTGGTTGCGATTAACCGCTTCCCAACCGATACCGAT GAGGAGCTTGAGTGGCTTAAGCAGGCTGTTGAGCAAACTAAGGCCTTTGGTAGCGAGATCAGTGAAGCCTTTGGTAAAGG TGCCGAGGGAGCAACTAAACTAGCGGATATGGTTTATCATGCCACACAAACGCCGTCGGACTTTAAGTTACTTTATCAAA GCGACACAAGCTTAGAAGCTAAGCTAATGACCCTCGCAGAAGTTGGCTATGGTGCATCGAGCGTGACGTTATCCGATAAG GCCAAGTCACAGCTACACTGGCTAACCAAACATAATTATGGCCAGCTACCTATCTGCGTGGCTAAAACGCCGATGTCGAT AAGTCATGACCCCAGTATTAAAGGGATCCCGACAGAATTTGAGTTACCAATCACCGAGCTAAGACTGAATGCGGGAGCCG GTTTTGTTACAGCATTAGTTGGCCAAGTGATGACCATGCCGGGTCTTGGAATTAAACCGGGTTATCTCAATGTCGATATT AATGATGATGGCGAGATTATTGGCCTAGCTTAA
Upstream 100 bases:
>100_bases AAGCTAAAATAACAACGCATTGTTATTTTCTCGATATCAGAGATGACCTATATTGCAGCGGTAACTACCCTACATAATAA TAGATTGTGGAGCCATAAGC
Downstream 100 bases:
>100_bases GATTGCAATAGCTAATAAAAAGCCCCGGCAACCTAAGTTATCGGGGCTTTTTTAATTTTATCTTTAGAGCGACAGGATTT ATTTCTCTAAGGCAGTTTGA
Product: formate--tetrahydrofolate ligase
Products: NA
Alternate protein names: Formyltetrahydrofolate synthetase; FHS; FTHFS
Number of amino acids: Translated: 570; Mature: 570
Protein sequence:
>570_residues MQSDIEISRQHTCLPITEIAKDLGLNPDEFSPCGVNKAKVSQSVARRLADKKNAKLVIVTAVTPTPFGEGKTVTTIGLTQ AMNLNGIKTCACIRQPSMGPVFGTKGGAAGGGYAQVVPMEELNLHLTGDIHAVSSAHNLAAAAIDARLFHEHRLGAEVFA QESGLSALNIDSENILWRRVVDHNERSLRQIKVGYGKVNGPVHESGFDITAASELMAILALSQDLKDLRQRIGRLVLALN TQGEPITAEELGVAGAMTVIMADAIEPTLMQTLSGDPCFIHAGPFANIAHGNSSIIADTIAAKLADVVITEAGFGSDMGF EKFSNIKVRESGYAPSASVVVVTLKALKANSGIESDKDINQPDMERLQAGFANLEWHINNVSQYGVPVVVAINRFPTDTD EELEWLKQAVEQTKAFGSEISEAFGKGAEGATKLADMVYHATQTPSDFKLLYQSDTSLEAKLMTLAEVGYGASSVTLSDK AKSQLHWLTKHNYGQLPICVAKTPMSISHDPSIKGIPTEFELPITELRLNAGAGFVTALVGQVMTMPGLGIKPGYLNVDI NDDGEIIGLA
Sequences:
>Translated_570_residues MQSDIEISRQHTCLPITEIAKDLGLNPDEFSPCGVNKAKVSQSVARRLADKKNAKLVIVTAVTPTPFGEGKTVTTIGLTQ AMNLNGIKTCACIRQPSMGPVFGTKGGAAGGGYAQVVPMEELNLHLTGDIHAVSSAHNLAAAAIDARLFHEHRLGAEVFA QESGLSALNIDSENILWRRVVDHNERSLRQIKVGYGKVNGPVHESGFDITAASELMAILALSQDLKDLRQRIGRLVLALN TQGEPITAEELGVAGAMTVIMADAIEPTLMQTLSGDPCFIHAGPFANIAHGNSSIIADTIAAKLADVVITEAGFGSDMGF EKFSNIKVRESGYAPSASVVVVTLKALKANSGIESDKDINQPDMERLQAGFANLEWHINNVSQYGVPVVVAINRFPTDTD EELEWLKQAVEQTKAFGSEISEAFGKGAEGATKLADMVYHATQTPSDFKLLYQSDTSLEAKLMTLAEVGYGASSVTLSDK AKSQLHWLTKHNYGQLPICVAKTPMSISHDPSIKGIPTEFELPITELRLNAGAGFVTALVGQVMTMPGLGIKPGYLNVDI NDDGEIIGLA >Mature_570_residues MQSDIEISRQHTCLPITEIAKDLGLNPDEFSPCGVNKAKVSQSVARRLADKKNAKLVIVTAVTPTPFGEGKTVTTIGLTQ AMNLNGIKTCACIRQPSMGPVFGTKGGAAGGGYAQVVPMEELNLHLTGDIHAVSSAHNLAAAAIDARLFHEHRLGAEVFA QESGLSALNIDSENILWRRVVDHNERSLRQIKVGYGKVNGPVHESGFDITAASELMAILALSQDLKDLRQRIGRLVLALN TQGEPITAEELGVAGAMTVIMADAIEPTLMQTLSGDPCFIHAGPFANIAHGNSSIIADTIAAKLADVVITEAGFGSDMGF EKFSNIKVRESGYAPSASVVVVTLKALKANSGIESDKDINQPDMERLQAGFANLEWHINNVSQYGVPVVVAINRFPTDTD EELEWLKQAVEQTKAFGSEISEAFGKGAEGATKLADMVYHATQTPSDFKLLYQSDTSLEAKLMTLAEVGYGASSVTLSDK AKSQLHWLTKHNYGQLPICVAKTPMSISHDPSIKGIPTEFELPITELRLNAGAGFVTALVGQVMTMPGLGIKPGYLNVDI NDDGEIIGLA
Specific function: Unknown
COG id: COG2759
COG function: function code F; Formyltetrahydrofolate synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the formate--tetrahydrofolate ligase family
Homologues:
Organism=Homo sapiens, GI222136639, Length=612, Percent_Identity=46.2418300653595, Blast_Score=504, Evalue=1e-143, Organism=Homo sapiens, GI36796743, Length=612, Percent_Identity=44.4444444444444, Blast_Score=484, Evalue=1e-137, Organism=Homo sapiens, GI310124614, Length=81, Percent_Identity=44.4444444444444, Blast_Score=83, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17568737, Length=618, Percent_Identity=47.0873786407767, Blast_Score=503, Evalue=1e-142, Organism=Caenorhabditis elegans, GI17568739, Length=618, Percent_Identity=47.0873786407767, Blast_Score=503, Evalue=1e-142, Organism=Saccharomyces cerevisiae, GI6321643, Length=625, Percent_Identity=43.84, Blast_Score=481, Evalue=1e-136, Organism=Saccharomyces cerevisiae, GI6319558, Length=629, Percent_Identity=42.6073131955485, Blast_Score=473, Evalue=1e-134, Organism=Drosophila melanogaster, GI62472483, Length=617, Percent_Identity=44.8946515397083, Blast_Score=467, Evalue=1e-132, Organism=Drosophila melanogaster, GI45551871, Length=617, Percent_Identity=44.8946515397083, Blast_Score=467, Evalue=1e-132, Organism=Drosophila melanogaster, GI24645718, Length=617, Percent_Identity=44.8946515397083, Blast_Score=467, Evalue=1e-131, Organism=Drosophila melanogaster, GI17137370, Length=617, Percent_Identity=44.8946515397083, Blast_Score=467, Evalue=1e-131,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FTHS_SHEHH (B0TVP3)
Other databases:
- EMBL: CP000931 - RefSeq: YP_001676005.1 - ProteinModelPortal: B0TVP3 - SMR: B0TVP3 - GeneID: 5904001 - GenomeReviews: CP000931_GR - KEGG: shl:Shal_3806 - HOGENOM: HBG677721 - OMA: LEWHINN - ProtClustDB: PRK13506 - BioCyc: SHAL458817:SHAL_3806-MONOMER - HAMAP: MF_01543 - InterPro: IPR000559
Pfam domain/function: PF01268 FTHFS
EC number: =6.3.4.3
Molecular weight: Translated: 60794; Mature: 60794
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS00721 FTHFS_1; PS00722 FTHFS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSDIEISRQHTCLPITEIAKDLGLNPDEFSPCGVNKAKVSQSVARRLADKKNAKLVIVT CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE AVTPTPFGEGKTVTTIGLTQAMNLNGIKTCACIRQPSMGPVFGTKGGAAGGGYAQVVPME EECCCCCCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHH ELNLHLTGDIHAVSSAHNLAAAAIDARLFHEHRLGAEVFAQESGLSALNIDSENILWRRV HCCEEEECCEEEHHCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCHHHHHH VDHNERSLRQIKVGYGKVNGPVHESGFDITAASELMAILALSQDLKDLRQRIGRLVLALN HCCCHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEE TQGEPITAEELGVAGAMTVIMADAIEPTLMQTLSGDPCFIHAGPFANIAHGNSSIIADTI CCCCCCCHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCEECCCCCCHHHHHH AAKLADVVITEAGFGSDMGFEKFSNIKVRESGYAPSASVVVVTLKALKANSGIESDKDIN HHHHHHHHEECCCCCCCCCHHHHCCEEEEECCCCCCCCEEEEEEEHHHCCCCCCCCCCCC QPDMERLQAGFANLEWHINNVSQYGVPVVVAINRFPTDTDEELEWLKQAVEQTKAFGSEI CHHHHHHHCCCCCEEEEECCHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH SEAFGKGAEGATKLADMVYHATQTPSDFKLLYQSDTSLEAKLMTLAEVGYGASSVTLSDK HHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECHH AKSQLHWLTKHNYGQLPICVAKTPMSISHDPSIKGIPTEFELPITELRLNAGAGFVTALV HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCHHHHHHH GQVMTMPGLGIKPGYLNVDINDDGEIIGLA HHHHHCCCCCCCCCEEEEEECCCCCEEEEC >Mature Secondary Structure MQSDIEISRQHTCLPITEIAKDLGLNPDEFSPCGVNKAKVSQSVARRLADKKNAKLVIVT CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE AVTPTPFGEGKTVTTIGLTQAMNLNGIKTCACIRQPSMGPVFGTKGGAAGGGYAQVVPME EECCCCCCCCCEEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHH ELNLHLTGDIHAVSSAHNLAAAAIDARLFHEHRLGAEVFAQESGLSALNIDSENILWRRV HCCEEEECCEEEHHCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCCHHHHHH VDHNERSLRQIKVGYGKVNGPVHESGFDITAASELMAILALSQDLKDLRQRIGRLVLALN HCCCHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEE TQGEPITAEELGVAGAMTVIMADAIEPTLMQTLSGDPCFIHAGPFANIAHGNSSIIADTI CCCCCCCHHHHCCHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCEECCCCCCHHHHHH AAKLADVVITEAGFGSDMGFEKFSNIKVRESGYAPSASVVVVTLKALKANSGIESDKDIN HHHHHHHHEECCCCCCCCCHHHHCCEEEEECCCCCCCCEEEEEEEHHHCCCCCCCCCCCC QPDMERLQAGFANLEWHINNVSQYGVPVVVAINRFPTDTDEELEWLKQAVEQTKAFGSEI CHHHHHHHCCCCCEEEEECCHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH SEAFGKGAEGATKLADMVYHATQTPSDFKLLYQSDTSLEAKLMTLAEVGYGASSVTLSDK HHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECHH AKSQLHWLTKHNYGQLPICVAKTPMSISHDPSIKGIPTEFELPITELRLNAGAGFVTALV HHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCHHHHHHH GQVMTMPGLGIKPGYLNVDINDDGEIIGLA HHHHHCCCCCCCCCEEEEEECCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA