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The map label for this gene is rraB [H]

Identifier: 167625702

GI number: 167625702

Start: 4613969

End: 4614379

Strand: Reverse

Name: rraB [H]

Synonym: Shal_3797

Alternate gene names: 167625702

Gene position: 4614379-4613969 (Counterclockwise)

Preceding gene: 167625703

Following gene: 167625699

Centisome position: 88.28

GC content: 44.53

Gene sequence:

>411_bases
ATGTCTATTGAACGCCAGTTAAAAGAACAGAAACAAGAAAACAGTGAGATCGTTGAAGCGATCCTTGCAGATGGTTCATT
GGCCGATGCCGAGTACACCATTGAGCATCACTTCTCATCAACGAACTTCGATCGTTTAGAAAAAGCGGCTGTTGACGCAT
TTAAGCTAGGTTATGAAGTCAATGATGCTGAAGAGATGGAGTTAGAAGACGGCTCTGTGATCTACTGTTTCGATGCCGTC
GCTAGCCATGAGCTCAATACCGACTTGTTAGATGAAGCCTGCGAGAAGATGATTAACATCGCGGCGAAGCAGAAAATCGA
CTATGACGGTTGGGGTACGTATTTCATCGACGAAAATGGCGAAGAAGTCAGAGATGAATATGACGATGAAGACGAAGAGC
CATTGCACTAA

Upstream 100 bases:

>100_bases
ATACTATGATGTCTGAAAAGTTATCTCAGTTGAACCAAGAAGCTTCTGCATTAATGACTAAAGCGGTATAATCGGTCGCG
AAATTTTTGAGGAGTTATCG

Downstream 100 bases:

>100_bases
TCTTTATTGTTCACCGACTAAAATGCCCATCTAGTGATGGGCATTTTTGTTTCTAGCGTCTATAAATACTTGAGCAACTA
CTCGTAAGCGATAGTGCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MSIERQLKEQKQENSEIVEAILADGSLADAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEVNDAEEMELEDGSVIYCFDAV
ASHELNTDLLDEACEKMINIAAKQKIDYDGWGTYFIDENGEEVRDEYDDEDEEPLH

Sequences:

>Translated_136_residues
MSIERQLKEQKQENSEIVEAILADGSLADAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEVNDAEEMELEDGSVIYCFDAV
ASHELNTDLLDEACEKMINIAAKQKIDYDGWGTYFIDENGEEVRDEYDDEDEEPLH
>Mature_135_residues
SIERQLKEQKQENSEIVEAILADGSLADAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEVNDAEEMELEDGSVIYCFDAVA
SHELNTDLLDEACEKMINIAAKQKIDYDGWGTYFIDENGEEVRDEYDDEDEEPLH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=120, Percent_Identity=52.5, Blast_Score=132, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 15564; Mature: 15433

Theoretical pI: Translated: 3.78; Mature: 3.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIERQLKEQKQENSEIVEAILADGSLADAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCCCCCHHHHHHHHHHHHHHCCCC
NDAEEMELEDGSVIYCFDAVASHELNTDLLDEACEKMINIAAKQKIDYDGWGTYFIDENG
CCCCCCCCCCCCEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
EEVRDEYDDEDEEPLH
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SIERQLKEQKQENSEIVEAILADGSLADAEYTIEHHFSSTNFDRLEKAAVDAFKLGYEV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCCCCCCHHHHHHHHHHHHHHCCCC
NDAEEMELEDGSVIYCFDAVASHELNTDLLDEACEKMINIAAKQKIDYDGWGTYFIDENG
CCCCCCCCCCCCEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
EEVRDEYDDEDEEPLH
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA