Click here to switch to the map view.

The map label for this gene is ycaN [H]

Identifier: 167625686

GI number: 167625686

Start: 4590158

End: 4591108

Strand: Reverse

Name: ycaN [H]

Synonym: Shal_3781

Alternate gene names: 167625686

Gene position: 4591108-4590158 (Counterclockwise)

Preceding gene: 167625691

Following gene: 167625682

Centisome position: 87.84

GC content: 47.42

Gene sequence:

>951_bases
ATGAAAACCGAAGATATTGCCCTGTTCCATCGAATTGTCGAAACTGGCAGTTTAGTCGAGGCGGCAGATATACTCAATTT
GCCAAAATCCACCTTGAGTCGACGTCTGCAGGCTCTCGAGGATGAACTTGGCGTGAAGTTGTTTCATCGTCAGAGTCGGG
CGATGACTTTGACGGCTTCGGGTAGCCATTTCTATGATAAAACCACCTCTATGTTAGCGACACTGGAGCAGACTCTGTCT
GAGCTCAGTGGTGAGGAGTCTGAAGTTACAGGCCATCTGCGCATTTTGATCTTTCCGGTGCCAGAGCTGACCCATATTAC
TCATGCTATTTTTGAGTTTATGGATTTGCATCCTGAGTTGACGGTAGAGATTATTGTCAGCACAGAGCCGCAAGATATGA
TCCGTAATAACATAGACTTGGCCTTTATGCTCGAAGATGCCTTCAATGAAAATGAGATGGTGGCGCGGCATATCATTAGC
GAAACCGTGCACTTCTTTGCCAGTCCAGAGTACCTAGCAAAAGCGGGGCGTCCAACGAGTCCTGATGAGTTACCCCAGCA
CAACTCCATTTTGTTCCGTTACCCTAATGGGCGGATTTTTAACGATGTGCCCTTTGGTAAAGACAGAACCCTGTCGGTTA
AGGGCAACCTGTGTGTTAACAGCCTCGCCACCTGTTTAGAAGCGACCTTGATGGGGCGGGGGATCTCCATGATGCCGCTT
CCTTTTGCTAAAGAGCATATTGAAAGCGGTGAACTAGAGATGTTGTTTGAAGATGTCGAGCCCTACGAGGGCAAGTGTTT
CTTAGTTTATCCATCGAGACGTTTTATTAGTTTAGCGAGCCAGCGTTTTATCGACTACATGATGAATGCTATGGAGGAGT
GTATGCAGAGCGGCAGCGGTCGTTGTGATAAGGAGGTCAAGATCCGTGGTGCTATCAAGTCAATGATATAG

Upstream 100 bases:

>100_bases
TTCCGAAAAGTGAAACTACTTTTACTTGCTTTGGTGTCACAAGTGTGAACAAAGTGATAATAGCGAGTAGTCAGCGGGTT
GGAAATGAGAGGATTTTTAG

Downstream 100 bases:

>100_bases
CTAGCCAAGATAGTCTGCCGTCGAGACAGAATTCAACCGCGAGCCTAGTTAGGCTCGCGGTTTTTGTTTTCAGTCCTAAA
GTGCCTGCTTCAGTAGGTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKTEDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELGVKLFHRQSRAMTLTASGSHFYDKTTSMLATLEQTLS
ELSGEESEVTGHLRILIFPVPELTHITHAIFEFMDLHPELTVEIIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHIIS
ETVHFFASPEYLAKAGRPTSPDELPQHNSILFRYPNGRIFNDVPFGKDRTLSVKGNLCVNSLATCLEATLMGRGISMMPL
PFAKEHIESGELEMLFEDVEPYEGKCFLVYPSRRFISLASQRFIDYMMNAMEECMQSGSGRCDKEVKIRGAIKSMI

Sequences:

>Translated_316_residues
MKTEDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELGVKLFHRQSRAMTLTASGSHFYDKTTSMLATLEQTLS
ELSGEESEVTGHLRILIFPVPELTHITHAIFEFMDLHPELTVEIIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHIIS
ETVHFFASPEYLAKAGRPTSPDELPQHNSILFRYPNGRIFNDVPFGKDRTLSVKGNLCVNSLATCLEATLMGRGISMMPL
PFAKEHIESGELEMLFEDVEPYEGKCFLVYPSRRFISLASQRFIDYMMNAMEECMQSGSGRCDKEVKIRGAIKSMI
>Mature_316_residues
MKTEDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELGVKLFHRQSRAMTLTASGSHFYDKTTSMLATLEQTLS
ELSGEESEVTGHLRILIFPVPELTHITHAIFEFMDLHPELTVEIIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHIIS
ETVHFFASPEYLAKAGRPTSPDELPQHNSILFRYPNGRIFNDVPFGKDRTLSVKGNLCVNSLATCLEATLMGRGISMMPL
PFAKEHIESGELEMLFEDVEPYEGKCFLVYPSRRFISLASQRFIDYMMNAMEECMQSGSGRCDKEVKIRGAIKSMI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.8194444444444, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=29.4314381270903, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=29.757785467128, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=24.2320819112628, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789639, Length=313, Percent_Identity=23.961661341853, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789440, Length=265, Percent_Identity=27.1698113207547, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081978, Length=278, Percent_Identity=25.1798561151079, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788706, Length=174, Percent_Identity=28.1609195402299, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=22.7450980392157, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787601, Length=125, Percent_Identity=27.2, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35728; Mature: 35728

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELGVKLFHRQSRAMTLTAS
CCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
GSHFYDKTTSMLATLEQTLSELSGEESEVTGHLRILIFPVPELTHITHAIFEFMDLHPEL
CCCHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCE
TVEIIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHIISETVHFFASPEYLAKAGRPTS
EEEEEEECCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PDELPQHNSILFRYPNGRIFNDVPFGKDRTLSVKGNLCVNSLATCLEATLMGRGISMMPL
CHHCCCCCCEEEECCCCCEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCC
PFAKEHIESGELEMLFEDVEPYEGKCFLVYPSRRFISLASQRFIDYMMNAMEECMQSGSG
CHHHHHCCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RCDKEVKIRGAIKSMI
CCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKTEDIALFHRIVETGSLVEAADILNLPKSTLSRRLQALEDELGVKLFHRQSRAMTLTAS
CCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
GSHFYDKTTSMLATLEQTLSELSGEESEVTGHLRILIFPVPELTHITHAIFEFMDLHPEL
CCCHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCE
TVEIIVSTEPQDMIRNNIDLAFMLEDAFNENEMVARHIISETVHFFASPEYLAKAGRPTS
EEEEEEECCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PDELPQHNSILFRYPNGRIFNDVPFGKDRTLSVKGNLCVNSLATCLEATLMGRGISMMPL
CHHCCCCCCEEEECCCCCEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCC
PFAKEHIESGELEMLFEDVEPYEGKCFLVYPSRRFISLASQRFIDYMMNAMEECMQSGSG
CHHHHHCCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RCDKEVKIRGAIKSMI
CCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]