| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is mlaE [H]
Identifier: 167625602
GI number: 167625602
Start: 4497617
End: 4498402
Strand: Reverse
Name: mlaE [H]
Synonym: Shal_3697
Alternate gene names: 167625602
Gene position: 4498402-4497617 (Counterclockwise)
Preceding gene: 167625603
Following gene: 167625601
Centisome position: 86.06
GC content: 49.62
Gene sequence:
>786_bases GTGAGCTTGATTGATCAAATTGCTCGATTAGGTAGGGCTAGTATCGAATTTGTGATTGGGCTAGGAAAAGCCGGTTTGAT GCTATGGGGCGCAATTGCACATCGCCCTAGGTTTCGAAAAGGTGCACCGCTGCTGTTGAGGCAGCTGTATGTTGTGGGCG TACAGTCGATGGTGATTATCTTAGTTTCAGGCCTGTTTATCGGCATGGTACTGGCGCTGCAGGGCTATAATATTTTAGTG GGCTTTGGCACCGAAGAAAGTTTAGGTCCCATGGTTGCTCTAAGCTTATTAAGGGAGCTAGGCCCCGTGGTGACGGCACT GCTATTTGCTGGCCGAGCGGGCTCTGCGCTAACGGCTGAGCTTGGCCTAATGAAGAGTACCGAGCAGCTGGCGAGTCTTG AGATGATGGCGATTGACCCACTGAGGCAGATTATTGCGCCGCGTTTTTGGGCTGGCGTCATTAGCTTGCCATTACTGGCA TTGATGTTTACTGCTGTGGGGATCTATGGCGGACACATAGTCGGTGTTGAGTGGAAAGGCATTGATAGCGGTAGCTTCTG GTCGATTCTTCAGGCATCAGTTGAGTGGCGAGAAGATATTGTTAATTGCATGATTAAGAGCCTACTGTTTGCGGTTGTGG TGACATGGATAGCGCTTTATCGTGGCTACCATGTTATTCCAAATCCGGAAGGGATTAGTCGAGCGACGACTCAGACGGTA GTACAATCTAGCCTAGCTGTTTTAGCGTTGGACTTCCTACTGACAGCGATAATGTTTGGTCAGTAG
Upstream 100 bases:
>100_bases TTGTCAGAAGATCCAAAGTTAAAACAGTTTATTGGTGGTGAGCCTGATGGTCCGGTACCGTTTCACTACCCAGCAGAAGA TTATAAGAAGGAACTACTCC
Downstream 100 bases:
>100_bases TTGTATGATGATTGAGAGAGTTCCTAGTTGTTAATTATTGTTTAGATTTATTCAATAGAGTGGTAAATGAGTTATGTTGA CAAGGAAAATTGAGATTCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MSLIDQIARLGRASIEFVIGLGKAGLMLWGAIAHRPRFRKGAPLLLRQLYVVGVQSMVIILVSGLFIGMVLALQGYNILV GFGTEESLGPMVALSLLRELGPVVTALLFAGRAGSALTAELGLMKSTEQLASLEMMAIDPLRQIIAPRFWAGVISLPLLA LMFTAVGIYGGHIVGVEWKGIDSGSFWSILQASVEWREDIVNCMIKSLLFAVVVTWIALYRGYHVIPNPEGISRATTQTV VQSSLAVLALDFLLTAIMFGQ
Sequences:
>Translated_261_residues MSLIDQIARLGRASIEFVIGLGKAGLMLWGAIAHRPRFRKGAPLLLRQLYVVGVQSMVIILVSGLFIGMVLALQGYNILV GFGTEESLGPMVALSLLRELGPVVTALLFAGRAGSALTAELGLMKSTEQLASLEMMAIDPLRQIIAPRFWAGVISLPLLA LMFTAVGIYGGHIVGVEWKGIDSGSFWSILQASVEWREDIVNCMIKSLLFAVVVTWIALYRGYHVIPNPEGISRATTQTV VQSSLAVLALDFLLTAIMFGQ >Mature_260_residues SLIDQIARLGRASIEFVIGLGKAGLMLWGAIAHRPRFRKGAPLLLRQLYVVGVQSMVIILVSGLFIGMVLALQGYNILVG FGTEESLGPMVALSLLRELGPVVTALLFAGRAGSALTAELGLMKSTEQLASLEMMAIDPLRQIIAPRFWAGVISLPLLAL MFTAVGIYGGHIVGVEWKGIDSGSFWSILQASVEWREDIVNCMIKSLLFAVVVTWIALYRGYHVIPNPEGISRATTQTVV QSSLAVLALDFLLTAIMFGQ
Specific function: Part of the ABC transporter complex mlaFEDB that actively prevents phospholipid accumulation at the cell surface. Probably maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner memb
COG id: COG0767
COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mlaE permease family [H]
Homologues:
Organism=Escherichia coli, GI1789585, Length=259, Percent_Identity=67.1814671814672, Blast_Score=355, Evalue=1e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003453 [H]
Pfam domain/function: PF02405 DUF140 [H]
EC number: NA
Molecular weight: Translated: 28168; Mature: 28037
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIDQIARLGRASIEFVIGLGKAGLMLWGAIAHRPRFRKGAPLLLRQLYVVGVQSMVII CCHHHHHHHHCCHHHHHHEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH LVSGLFIGMVLALQGYNILVGFGTEESLGPMVALSLLRELGPVVTALLFAGRAGSALTAE HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH LGLMKSTEQLASLEMMAIDPLRQIIAPRFWAGVISLPLLALMFTAVGIYGGHIVGVEWKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC IDSGSFWSILQASVEWREDIVNCMIKSLLFAVVVTWIALYRGYHVIPNPEGISRATTQTV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH VQSSLAVLALDFLLTAIMFGQ HHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLIDQIARLGRASIEFVIGLGKAGLMLWGAIAHRPRFRKGAPLLLRQLYVVGVQSMVII CHHHHHHHHCCHHHHHHEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH LVSGLFIGMVLALQGYNILVGFGTEESLGPMVALSLLRELGPVVTALLFAGRAGSALTAE HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH LGLMKSTEQLASLEMMAIDPLRQIIAPRFWAGVISLPLLALMFTAVGIYGGHIVGVEWKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC IDSGSFWSILQASVEWREDIVNCMIKSLLFAVVVTWIALYRGYHVIPNPEGISRATTQTV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH VQSSLAVLALDFLLTAIMFGQ HHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]