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The map label for this gene is yhcM [H]

Identifier: 167625590

GI number: 167625590

Start: 4485251

End: 4486360

Strand: Reverse

Name: yhcM [H]

Synonym: Shal_3684

Alternate gene names: 167625590

Gene position: 4486360-4485251 (Counterclockwise)

Preceding gene: 167625594

Following gene: 167625589

Centisome position: 85.83

GC content: 44.14

Gene sequence:

>1110_bases
GTGTCGCAATTAACTCCCTGGCAGCATTATCAGCAAGATTTAACTCGAGATGATTTTTCACCTGACGCAGCGCAAGAGCA
AGCTGTAAAACAGTTACAGCGTGTTTATGATGAGCTAATTGCTTTAAATGATAATCAAGGCAAGAGCAGCAAACTGTTTT
CTATATTTAGTAAGAAGCCTAAGCAATCAGTGCAAGGTCTCTATCTTTGGGGAGGCGTTGGTCGTGGAAAAACTTATCTA
ATGGACACGTTTTTTGATGCGCTGCCGAGTAAGAGAAAGCTGCGGGCGCATTTTCACCGCTTTATGCATCAGCTGCATAT
CGACTTAGCGGAGCTTCAGGGGCAGCGAGATCCACTGGTCATCATTGCCAAGAAAATGGCAGCGCAATATCAAGTTATCT
GCTTTGACGAGTTTTTTGTTTCCGATATCACCGATGCTATGCTGCTGGGCACCCTGTTCGAGTCACTTTTTGCCGAAGGC
GTTGCACTCGTTGCAACCTCAAATATTATTCCTGATGAGCTTTATCGTAATGGTTTGCAGCGTGCGCGATTCCTGCCTGC
GATAGCGGCAATCAATAAACACTGTGATGTCTTAAATGTTGATTCAGGTGTCGATTACCGCTTAAGAACCTTAGAACAAG
CTGAAATTTTCCATTCGCCACTCGATGTGAAAGCAGAGCAAAATCTAAAAGAATACTTTGATAAGTTAGCACCAGAATCA
GAAGTGTCGACTCAAGGCCTAGCAATAGATGGTCGTGTTATTGAGATCCGTCAACAGGCTCAAGGCGTTTTGCTCATCGA
CTTTAGAGCCTTGTGCGATGGCCCAAGAAGTCAACGTGATTACATGGAAGTTGCTAGACTTTACCATACAGTACTACTCA
GCAATGTTGAGCAGATGGGCGAGCACTTAACGGGTGATGATATTGCGCGTCGCTTCTTAGCTATGGTGGATGAGTTTTAT
GAGCGTAATGTTAAATTGATTATCTCATCGGCGGTAGCACTAGAAGATATTTATACCGAGGGGCTGTTGAGCTTTGAGTT
CAAGCGCTGTCGTTCAAGGCTAACGGAGATGCAATCTCATGATTATCTGTCTTTGGAACATATTCCATAG

Upstream 100 bases:

>100_bases
GTAGTATTTACTAAATAAAGCATTAACTAAAAAATAATTCGTCAAACGGCTCATATTGAGCTGATTTGTGTGTATACCCT
ACAAGTAGAGAGTGATTTAC

Downstream 100 bases:

>100_bases
AATTAGACTAAAAAAATAGGTGATTTTTAACTCAGCTTTGTCTATAATCCGCAACCTGCCCTCGTTATCCACCAATTAGG
TGGAAGTTGTAAAGCCTAAT

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSQLTPWQHYQQDLTRDDFSPDAAQEQAVKQLQRVYDELIALNDNQGKSSKLFSIFSKKPKQSVQGLYLWGGVGRGKTYL
MDTFFDALPSKRKLRAHFHRFMHQLHIDLAELQGQRDPLVIIAKKMAAQYQVICFDEFFVSDITDAMLLGTLFESLFAEG
VALVATSNIIPDELYRNGLQRARFLPAIAAINKHCDVLNVDSGVDYRLRTLEQAEIFHSPLDVKAEQNLKEYFDKLAPES
EVSTQGLAIDGRVIEIRQQAQGVLLIDFRALCDGPRSQRDYMEVARLYHTVLLSNVEQMGEHLTGDDIARRFLAMVDEFY
ERNVKLIISSAVALEDIYTEGLLSFEFKRCRSRLTEMQSHDYLSLEHIP

Sequences:

>Translated_369_residues
MSQLTPWQHYQQDLTRDDFSPDAAQEQAVKQLQRVYDELIALNDNQGKSSKLFSIFSKKPKQSVQGLYLWGGVGRGKTYL
MDTFFDALPSKRKLRAHFHRFMHQLHIDLAELQGQRDPLVIIAKKMAAQYQVICFDEFFVSDITDAMLLGTLFESLFAEG
VALVATSNIIPDELYRNGLQRARFLPAIAAINKHCDVLNVDSGVDYRLRTLEQAEIFHSPLDVKAEQNLKEYFDKLAPES
EVSTQGLAIDGRVIEIRQQAQGVLLIDFRALCDGPRSQRDYMEVARLYHTVLLSNVEQMGEHLTGDDIARRFLAMVDEFY
ERNVKLIISSAVALEDIYTEGLLSFEFKRCRSRLTEMQSHDYLSLEHIP
>Mature_368_residues
SQLTPWQHYQQDLTRDDFSPDAAQEQAVKQLQRVYDELIALNDNQGKSSKLFSIFSKKPKQSVQGLYLWGGVGRGKTYLM
DTFFDALPSKRKLRAHFHRFMHQLHIDLAELQGQRDPLVIIAKKMAAQYQVICFDEFFVSDITDAMLLGTLFESLFAEGV
ALVATSNIIPDELYRNGLQRARFLPAIAAINKHCDVLNVDSGVDYRLRTLEQAEIFHSPLDVKAEQNLKEYFDKLAPESE
VSTQGLAIDGRVIEIRQQAQGVLLIDFRALCDGPRSQRDYMEVARLYHTVLLSNVEQMGEHLTGDDIARRFLAMVDEFYE
RNVKLIISSAVALEDIYTEGLLSFEFKRCRSRLTEMQSHDYLSLEHIP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=405, Percent_Identity=33.8271604938272, Blast_Score=221, Evalue=7e-58,
Organism=Escherichia coli, GI1789627, Length=375, Percent_Identity=50.4, Blast_Score=366, Evalue=1e-102,
Organism=Caenorhabditis elegans, GI17505769, Length=348, Percent_Identity=32.7586206896552, Blast_Score=201, Evalue=4e-52,
Organism=Saccharomyces cerevisiae, GI6320783, Length=403, Percent_Identity=29.2803970223325, Blast_Score=154, Evalue=2e-38,
Organism=Drosophila melanogaster, GI20129913, Length=427, Percent_Identity=31.1475409836066, Blast_Score=185, Evalue=5e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42288; Mature: 42157

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLTPWQHYQQDLTRDDFSPDAAQEQAVKQLQRVYDELIALNDNQGKSSKLFSIFSKKP
CCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
KQSVQGLYLWGGVGRGKTYLMDTFFDALPSKRKLRAHFHRFMHQLHIDLAELQGQRDPLV
HHHHCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IIAKKMAAQYQVICFDEFFVSDITDAMLLGTLFESLFAEGVALVATSNIIPDELYRNGLQ
EEEHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHCCCCCHHHHHHHHHH
RARFLPAIAAINKHCDVLNVDSGVDYRLRTLEQAEIFHSPLDVKAEQNLKEYFDKLAPES
HHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
EVSTQGLAIDGRVIEIRQQAQGVLLIDFRALCDGPRSQRDYMEVARLYHTVLLSNVEQMG
CCCCCCEEECCHHHEEHHHHCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EHLTGDDIARRFLAMVDEFYERNVKLIISSAVALEDIYTEGLLSFEFKRCRSRLTEMQSH
HCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DYLSLEHIP
CCEEECCCC
>Mature Secondary Structure 
SQLTPWQHYQQDLTRDDFSPDAAQEQAVKQLQRVYDELIALNDNQGKSSKLFSIFSKKP
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
KQSVQGLYLWGGVGRGKTYLMDTFFDALPSKRKLRAHFHRFMHQLHIDLAELQGQRDPLV
HHHHCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IIAKKMAAQYQVICFDEFFVSDITDAMLLGTLFESLFAEGVALVATSNIIPDELYRNGLQ
EEEHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHCCCCCHHHHHHHHHH
RARFLPAIAAINKHCDVLNVDSGVDYRLRTLEQAEIFHSPLDVKAEQNLKEYFDKLAPES
HHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
EVSTQGLAIDGRVIEIRQQAQGVLLIDFRALCDGPRSQRDYMEVARLYHTVLLSNVEQMG
CCCCCCEEECCHHHEEHHHHCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EHLTGDDIARRFLAMVDEFYERNVKLIISSAVALEDIYTEGLLSFEFKRCRSRLTEMQSH
HCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DYLSLEHIP
CCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]