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The map label for this gene is orn [H]

Identifier: 167625547

GI number: 167625547

Start: 4439674

End: 4440219

Strand: Reverse

Name: orn [H]

Synonym: Shal_3641

Alternate gene names: 167625547

Gene position: 4440219-4439674 (Counterclockwise)

Preceding gene: 167625553

Following gene: 167625546

Centisome position: 84.95

GC content: 41.03

Gene sequence:

>546_bases
ATGGCTATAGATGAAAACAATCTGATTTGGGTCGATTTGGAAATGACAGGACTTGATCCTGCCGTTGATAAGATTATAGA
AATGGCCACAATTGTGACAGATAAAGAGCTTAATATTATAGCGCAAGGGCCAGTTATTGCTATTTATCAGTCTGACGAAC
AGTTAGCATTGATGGACGATTGGAACCAAAAACATCATGGTGAGTCTGGTTTAGTTGACCGCGTTAAAGCGAGTACAACT
AATGAAGAGCAAGCAATAGAGCAGACTATCGCTTTCTTATCTCAATATGTTCCAGCGGGTGTTTCACCTATGTGTGGTAA
CAGCATTGGTCAAGATCGTCGCTTCCTAAATCGTTATATGCCAGCACTTGAAGATTACTTTCACTACCGAAATATCGATG
TGAGTACAATTAAAGAGCTTGTTCGCCGTTGGGAGCCATCAGCGATGGAAGGCTTTGTGAAGAAGAACACTCACCAAGCA
TTGCAGGATATCGAAGAATCTATCGCCGAACTGCAGTTTTATCGAGCGAAAGTATTTAGAATTTGA

Upstream 100 bases:

>100_bases
AATGATAAAGGTGATTTTGTGTTGCTTAAAAAAGCAGTATGATACACGGTCTTAAACAAAAAAGCCTGAATTTAGGCTAA
CAGGAATAACGGGTCGCTTT

Downstream 100 bases:

>100_bases
CCAATCAGTCAGTTTATTTGCAAGAAGGGGTTGCAGAGTAGGAAAATTCTCATATAATGCGGCCTCAACTTTTCGAAGAG
TGAAAGACTTTACGATTAGA

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MAIDENNLIWVDLEMTGLDPAVDKIIEMATIVTDKELNIIAQGPVIAIYQSDEQLALMDDWNQKHHGESGLVDRVKASTT
NEEQAIEQTIAFLSQYVPAGVSPMCGNSIGQDRRFLNRYMPALEDYFHYRNIDVSTIKELVRRWEPSAMEGFVKKNTHQA
LQDIEESIAELQFYRAKVFRI

Sequences:

>Translated_181_residues
MAIDENNLIWVDLEMTGLDPAVDKIIEMATIVTDKELNIIAQGPVIAIYQSDEQLALMDDWNQKHHGESGLVDRVKASTT
NEEQAIEQTIAFLSQYVPAGVSPMCGNSIGQDRRFLNRYMPALEDYFHYRNIDVSTIKELVRRWEPSAMEGFVKKNTHQA
LQDIEESIAELQFYRAKVFRI
>Mature_180_residues
AIDENNLIWVDLEMTGLDPAVDKIIEMATIVTDKELNIIAQGPVIAIYQSDEQLALMDDWNQKHHGESGLVDRVKASTTN
EEQAIEQTIAFLSQYVPAGVSPMCGNSIGQDRRFLNRYMPALEDYFHYRNIDVSTIKELVRRWEPSAMEGFVKKNTHQAL
QDIEESIAELQFYRAKVFRI

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=52.6011560693642, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI87082382, Length=181, Percent_Identity=64.6408839779006, Blast_Score=259, Evalue=6e-71,
Organism=Caenorhabditis elegans, GI17557752, Length=175, Percent_Identity=47.4285714285714, Blast_Score=156, Evalue=5e-39,
Organism=Saccharomyces cerevisiae, GI6323088, Length=176, Percent_Identity=39.2045454545455, Blast_Score=117, Evalue=7e-28,
Organism=Drosophila melanogaster, GI21355135, Length=177, Percent_Identity=45.1977401129944, Blast_Score=179, Evalue=8e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20721; Mature: 20590

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDENNLIWVDLEMTGLDPAVDKIIEMATIVTDKELNIIAQGPVIAIYQSDEQLALMDD
CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEECCC
WNQKHHGESGLVDRVKASTTNEEQAIEQTIAFLSQYVPAGVSPMCGNSIGQDRRFLNRYM
CCHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
PALEDYFHYRNIDVSTIKELVRRWEPSAMEGFVKKNTHQALQDIEESIAELQFYRAKVFR
HHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
I
C
>Mature Secondary Structure 
AIDENNLIWVDLEMTGLDPAVDKIIEMATIVTDKELNIIAQGPVIAIYQSDEQLALMDD
CCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCEEECCC
WNQKHHGESGLVDRVKASTTNEEQAIEQTIAFLSQYVPAGVSPMCGNSIGQDRRFLNRYM
CCHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
PALEDYFHYRNIDVSTIKELVRRWEPSAMEGFVKKNTHQALQDIEESIAELQFYRAKVFR
HHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA