| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625546
Identifier: 167625546
GI number: 167625546
Start: 4437881
End: 4438336
Strand: Reverse
Name: 167625546
Synonym: Shal_3640
Alternate gene names: NA
Gene position: 4438336-4437881 (Counterclockwise)
Preceding gene: 167625547
Following gene: 167625545
Centisome position: 84.91
GC content: 38.82
Gene sequence:
>456_bases ATGCGTATTCAACAACTCAGTGAACTTTTAGGTTATGTTGCAACATGCCGCATAGAAATGGCGCAGCTTTATAAGCGTTT ACATACTCAAGCTGACTCTTCTCGAGTAAAGTTAATGTTAGAGTATTTTCAACAGCATGAGCGACACACCGCTGAGAAGT TAGAAAACTATATCGATGAAGCGCCTAAGAAAATTATTGATACTTGGTACAAAGATATTGTATTTGAAGATTTTATCGCT AATTGCCACCAGTTAACCTTGCCAGCGAGCATGAGTGAAGACGATGTATTAGAGCTGCATCTTGGTCTGGATAATCGTTT AATAGGCCTGTTAGAAAAAACGGCTAACTCTTCGGCGACTACTGAAACAAAAGGTGCGTTAGAGGATTTAGTGAGAGTGG AAAAAATTCAACAACAACGTCTAGTTCATAGCACTATTCGCATGGATGATATCTAA
Upstream 100 bases:
>100_bases TTGACAGTGTTCAAATATTGAGTCGACTTTTCATACCATAATTATCAAAGACTAAAATTTAGGCAAGTCACATAGAGTGG CTGATTTAGGAGAGCGATCA
Downstream 100 bases:
>100_bases CGGCTTATATCCGCTTAGCAATTATTCGCTTGGCAATCAGGCACCGGAAGGTGCCTTTTTTGATCGAATTTATTTACAAC TTGCATAACTATAATTGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 151; Mature: 151
Protein sequence:
>151_residues MRIQQLSELLGYVATCRIEMAQLYKRLHTQADSSRVKLMLEYFQQHERHTAEKLENYIDEAPKKIIDTWYKDIVFEDFIA NCHQLTLPASMSEDDVLELHLGLDNRLIGLLEKTANSSATTETKGALEDLVRVEKIQQQRLVHSTIRMDDI
Sequences:
>Translated_151_residues MRIQQLSELLGYVATCRIEMAQLYKRLHTQADSSRVKLMLEYFQQHERHTAEKLENYIDEAPKKIIDTWYKDIVFEDFIA NCHQLTLPASMSEDDVLELHLGLDNRLIGLLEKTANSSATTETKGALEDLVRVEKIQQQRLVHSTIRMDDI >Mature_151_residues MRIQQLSELLGYVATCRIEMAQLYKRLHTQADSSRVKLMLEYFQQHERHTAEKLENYIDEAPKKIIDTWYKDIVFEDFIA NCHQLTLPASMSEDDVLELHLGLDNRLIGLLEKTANSSATTETKGALEDLVRVEKIQQQRLVHSTIRMDDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17560; Mature: 17560
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIQQLSELLGYVATCRIEMAQLYKRLHTQADSSRVKLMLEYFQQHERHTAEKLENYIDE CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH APKKIIDTWYKDIVFEDFIANCHQLTLPASMSEDDVLELHLGLDNRLIGLLEKTANSSAT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCC TETKGALEDLVRVEKIQQQRLVHSTIRMDDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRIQQLSELLGYVATCRIEMAQLYKRLHTQADSSRVKLMLEYFQQHERHTAEKLENYIDE CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH APKKIIDTWYKDIVFEDFIANCHQLTLPASMSEDDVLELHLGLDNRLIGLLEKTANSSAT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCC TETKGALEDLVRVEKIQQQRLVHSTIRMDDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA