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The map label for this gene is irpA [H]

Identifier: 167625435

GI number: 167625435

Start: 4301106

End: 4302254

Strand: Reverse

Name: irpA [H]

Synonym: Shal_3527

Alternate gene names: 167625435

Gene position: 4302254-4301106 (Counterclockwise)

Preceding gene: 167625436

Following gene: 167625434

Centisome position: 82.31

GC content: 48.13

Gene sequence:

>1149_bases
ATGAAACACTTTACTCACTCAGCGCTAGCCGTCGCCCTCATTTCAGCCCTTAGTGCGTGTGGTGGCTCAGGTTCTGACGA
TACCCCTGTTGTTGTACCTGAAACTGGCTTTACGTTTTCAGCTACAGAGATGGTGACTAATCTAACCGATGATGTGATTG
TTGCAGGTTATTCAAATCTTGCCCTGCGCGGCGCGGCTATGCTTCAAGCGACTCAGACTCTGGTTGCCACACCGACTCAA
GCCAACTTGTTAGCCGCTCAAGAAGCGTGGAAGGCCGCTCGTCAGCCGTGGGAGCAGGGTGAATCACATATCTTTGGCCC
TGTTGACTCACTCGGTATCGACCCACACCTTGATAGCTGGCCGCTAAACACCACTGACTTAACAACAGTGCTGGCTAATA
ACACGGGTTTTGATGCTGATACCATTAAAGGTTGGAATGACGACGTGCAAGGTTTCCATACAATGGAATACCTTCTGTTT
GGTGATGGCGTTGCTGATAACACTAAAACGATTAGCGAGCTGACAACAAACGAGCGTGATTACTTAATGGGGCTCGCTGA
AGTCTTTCGTGATTACACCAAGACCCTCGATGACGCATGGCTTATCAGTCATGACGGCCAGAGCGGTAAAGCTTACGGTG
AATTACTGAAGAATTCTGGTGCCGATGGCAACACCTTCTATAGCTCAGAAGTGGGCGTGGTAGAGGAGCTAGTTAACGGC
ATGATCGGCATTGTCGATGAAGTGGGCAACGGTAAGATTGCCGATCCATTTGGTGAGTCAATCGATAAAGCCGACACCTC
AAAAGTAGAATCACAGTACTCTTGGAACTCATTAACAGACTTTAGCGATAACATTATTGGTGTGCGTAATGTTTATCTTG
GTGAGCTAGAGGGCAATGCCGATAAGCAAGGGATTATCGATTTCGTCAACGCGGCAAACCCAGCACTGGCAACACGAGTT
AAGACTGAAATCGACGATGCTATCACTAAAATTAACGCAATAGCGGGGGCGAACAATATGCCATTCCGTCAGGCGATTTC
TGATAGCGACGGACGCGTGCGTATTCAATCGGCAGTCGATGCACTGACTAAGCTACAAGCGAGCTTAGAGTCAGATGTTC
TTCCCCTGCTTAAAGAGTGGAATATTTAA

Upstream 100 bases:

>100_bases
GGCTGTGTCGTCTATTCCCGATACCAACTTTTTCGCTTTAGGCGTGGGTTACCAATTCTCACTTTAATTTGAACAGATTA
CATAATAAATGGAGTTTTTT

Downstream 100 bases:

>100_bases
ACCGAGAATATGCGAAGGAGGCCATTGGGCCTCCTTTTTAATTAAATAATTCCCTTGATTGTTAAGTGGTTAATTTCTTT
TGTTATGGCAGGGAAACGCC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKHFTHSALAVALISALSACGGSGSDDTPVVVPETGFTFSATEMVTNLTDDVIVAGYSNLALRGAAMLQATQTLVATPTQ
ANLLAAQEAWKAARQPWEQGESHIFGPVDSLGIDPHLDSWPLNTTDLTTVLANNTGFDADTIKGWNDDVQGFHTMEYLLF
GDGVADNTKTISELTTNERDYLMGLAEVFRDYTKTLDDAWLISHDGQSGKAYGELLKNSGADGNTFYSSEVGVVEELVNG
MIGIVDEVGNGKIADPFGESIDKADTSKVESQYSWNSLTDFSDNIIGVRNVYLGELEGNADKQGIIDFVNAANPALATRV
KTEIDDAITKINAIAGANNMPFRQAISDSDGRVRIQSAVDALTKLQASLESDVLPLLKEWNI

Sequences:

>Translated_382_residues
MKHFTHSALAVALISALSACGGSGSDDTPVVVPETGFTFSATEMVTNLTDDVIVAGYSNLALRGAAMLQATQTLVATPTQ
ANLLAAQEAWKAARQPWEQGESHIFGPVDSLGIDPHLDSWPLNTTDLTTVLANNTGFDADTIKGWNDDVQGFHTMEYLLF
GDGVADNTKTISELTTNERDYLMGLAEVFRDYTKTLDDAWLISHDGQSGKAYGELLKNSGADGNTFYSSEVGVVEELVNG
MIGIVDEVGNGKIADPFGESIDKADTSKVESQYSWNSLTDFSDNIIGVRNVYLGELEGNADKQGIIDFVNAANPALATRV
KTEIDDAITKINAIAGANNMPFRQAISDSDGRVRIQSAVDALTKLQASLESDVLPLLKEWNI
>Mature_382_residues
MKHFTHSALAVALISALSACGGSGSDDTPVVVPETGFTFSATEMVTNLTDDVIVAGYSNLALRGAAMLQATQTLVATPTQ
ANLLAAQEAWKAARQPWEQGESHIFGPVDSLGIDPHLDSWPLNTTDLTTVLANNTGFDADTIKGWNDDVQGFHTMEYLLF
GDGVADNTKTISELTTNERDYLMGLAEVFRDYTKTLDDAWLISHDGQSGKAYGELLKNSGADGNTFYSSEVGVVEELVNG
MIGIVDEVGNGKIADPFGESIDKADTSKVESQYSWNSLTDFSDNIIGVRNVYLGELEGNADKQGIIDFVNAANPALATRV
KTEIDDAITKINAIAGANNMPFRQAISDSDGRVRIQSAVDALTKLQASLESDVLPLLKEWNI

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: COG3487

COG function: function code P; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 40977; Mature: 40977

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHFTHSALAVALISALSACGGSGSDDTPVVVPETGFTFSATEMVTNLTDDVIVAGYSNL
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEHHHHHHHCCCCEEEECCHHH
ALRGAAMLQATQTLVATPTQANLLAAQEAWKAARQPWEQGESHIFGPVDSLGIDPHLDSW
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHCCCCCCCCCC
PLNTTDLTTVLANNTGFDADTIKGWNDDVQGFHTMEYLLFGDGVADNTKTISELTTNERD
CCCCHHHHHEEECCCCCCHHCCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCHH
YLMGLAEVFRDYTKTLDDAWLISHDGQSGKAYGELLKNSGADGNTFYSSEVGVVEELVNG
HHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHH
MIGIVDEVGNGKIADPFGESIDKADTSKVESQYSWNSLTDFSDNIIGVRNVYLGELEGNA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEECCCCC
DKQGIIDFVNAANPALATRVKTEIDDAITKINAIAGANNMPFRQAISDSDGRVRIQSAVD
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEHHHHHH
ALTKLQASLESDVLPLLKEWNI
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKHFTHSALAVALISALSACGGSGSDDTPVVVPETGFTFSATEMVTNLTDDVIVAGYSNL
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEHHHHHHHCCCCEEEECCHHH
ALRGAAMLQATQTLVATPTQANLLAAQEAWKAARQPWEQGESHIFGPVDSLGIDPHLDSW
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHCCCCCCCCCC
PLNTTDLTTVLANNTGFDADTIKGWNDDVQGFHTMEYLLFGDGVADNTKTISELTTNERD
CCCCHHHHHEEECCCCCCHHCCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCHH
YLMGLAEVFRDYTKTLDDAWLISHDGQSGKAYGELLKNSGADGNTFYSSEVGVVEELVNG
HHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHH
MIGIVDEVGNGKIADPFGESIDKADTSKVESQYSWNSLTDFSDNIIGVRNVYLGELEGNA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEECCCCC
DKQGIIDFVNAANPALATRVKTEIDDAITKINAIAGANNMPFRQAISDSDGRVRIQSAVD
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEHHHHHH
ALTKLQASLESDVLPLLKEWNI
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]