| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625432
Identifier: 167625432
GI number: 167625432
Start: 4297991
End: 4298521
Strand: Reverse
Name: 167625432
Synonym: Shal_3524
Alternate gene names: NA
Gene position: 4298521-4297991 (Counterclockwise)
Preceding gene: 167625433
Following gene: 167625431
Centisome position: 82.24
GC content: 46.89
Gene sequence:
>531_bases ATGGCACAGTCGACGTTTAAACGCTTAGCGAGAAAGTATATTGATTTGCAGCATGTGCTAATCATTATTACCAGCGCCTA TCTTATTTTTACCAGCGGTTGGATCTTGATTGGTCGCCGTCTACGCCCCAATGCGACGTTTTGGGATCAGAGCCATGTTT ACCTCGGGCTTGTCGCCGCTTTCTTGTCGATCACTTTTCTTATTACTACCTGCCTTAAAGGCAAGTGGCGTCAGTATTTT CCTTGGCTAGTCGGTGACTTTGCACAGCTTAAAACTGACATCCTAGGTTTTTTTAAGGGCAAGCTCCCCATTGCCGGTGG TCGCGGTTTATTTAGCGTCATCGAAGGTGTTGGCATGCTGCTGTTTTTGGCTGTCGGTGTCACCGGTATAGCCTGGTTTG CGACTCAAGGTAGCAGTGATGCGCTAATGTGGCGCGGTTATCATATTCATCTTGCGCAGGGCTTTATTGGCTTTATTGTT GTGCATGCCATCTTTGCCTGTTTGCATCTGCTGGACTTTATTCGAAACTAA
Upstream 100 bases:
>100_bases CAGATACCAATATTGAATATACTGATTGGAATAAGGTTGATACCTACGCCGACAGTATTCATCAGTTGGCGGTTACGGTT TAAAAAGTACAGGACGAGAT
Downstream 100 bases:
>100_bases CAATGCCAGTTTGAATATAAAGTTGGTTAGCCTTTTAATGAAGGCTAATTACATTTTTCTTTGATTGTTGCTACAGGGTA GCTAGTTCTGGATTACCACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MAQSTFKRLARKYIDLQHVLIIITSAYLIFTSGWILIGRRLRPNATFWDQSHVYLGLVAAFLSITFLITTCLKGKWRQYF PWLVGDFAQLKTDILGFFKGKLPIAGGRGLFSVIEGVGMLLFLAVGVTGIAWFATQGSSDALMWRGYHIHLAQGFIGFIV VHAIFACLHLLDFIRN
Sequences:
>Translated_176_residues MAQSTFKRLARKYIDLQHVLIIITSAYLIFTSGWILIGRRLRPNATFWDQSHVYLGLVAAFLSITFLITTCLKGKWRQYF PWLVGDFAQLKTDILGFFKGKLPIAGGRGLFSVIEGVGMLLFLAVGVTGIAWFATQGSSDALMWRGYHIHLAQGFIGFIV VHAIFACLHLLDFIRN >Mature_175_residues AQSTFKRLARKYIDLQHVLIIITSAYLIFTSGWILIGRRLRPNATFWDQSHVYLGLVAAFLSITFLITTCLKGKWRQYFP WLVGDFAQLKTDILGFFKGKLPIAGGRGLFSVIEGVGMLLFLAVGVTGIAWFATQGSSDALMWRGYHIHLAQGFIGFIVV HAIFACLHLLDFIRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19813; Mature: 19682
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQSTFKRLARKYIDLQHVLIIITSAYLIFTSGWILIGRRLRPNATFWDQSHVYLGLVAA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHH FLSITFLITTCLKGKWRQYFPWLVGDFAQLKTDILGFFKGKLPIAGGRGLFSVIEGVGML HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LFLAVGVTGIAWFATQGSSDALMWRGYHIHLAQGFIGFIVVHAIFACLHLLDFIRN HHHHHHHHHHHHHCCCCCCCCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AQSTFKRLARKYIDLQHVLIIITSAYLIFTSGWILIGRRLRPNATFWDQSHVYLGLVAA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHH FLSITFLITTCLKGKWRQYFPWLVGDFAQLKTDILGFFKGKLPIAGGRGLFSVIEGVGML HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH LFLAVGVTGIAWFATQGSSDALMWRGYHIHLAQGFIGFIVVHAIFACLHLLDFIRN HHHHHHHHHHHHHCCCCCCCCEEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA